myRT

myRT report for GCA_008385725.1_ASM838572v1

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Seq: REBF01000129.1 Escherichia coli strain EC36_ST38H scaffold_128, whole genome shotgun sequence (3118 bp)
Overview 1 RT 1: 1463-3117 bp Neighborhood of RT #1 [1463, 3116] InsE RVT-GII Feature: gene Location: 1463-1774 bp Feature: domain Description: InsE Location: 1466-1757 bp Feature: domain Description: InsE Location: 1 466-1 757 bp Feature: gene Location: 1798-2187 bp Feature: gene Location: 2790-3116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3063-3117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3063-31 1 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII

Seq: REBF01000018.1 Escherichia coli strain EC36_ST38H scaffold_17, whole genome shotgun sequence (81240 bp)
Overview 1 RT 1: 718-3864 bp Neighborhood of RT #1 [718, 3864] PHA02518 RVT-GII GIIM Feature: gene Location: 718-1344 bp Feature: domain Description: PHA02518 Location: 721-1339 bp Feature: domain Description: PHA02 518 Location: 72 1-1339 bp Feature: gene Location: 1464-1643 bp Feature: gene Location: 2027-3358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2312-2999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 312 -2 999 bp Feature: domain Description: GIIM Note: maturase Location: 3116-3284 bp Feature: domain Description: GIIM Note: maturase Location: 3116-32 84 bp Feature: gene Location: 3369-3641 bp Feature: gene Location: 3691-3864 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02518 (ParA-like protein; Provisional), RVT-GII, GIIM (pfam08388)

Seq: REBF01000050.1 Escherichia coli strain EC36_ST38H scaffold_49, whole genome shotgun sequence (26387 bp)
Overview 1 RT 1: 23567-26255 bp Neighborhood of RT #1 [23567, 26386] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 23567-24829 bp Feature: domain Description: YesM Location: 24080-24821 bp Feature: domain Description: YesM Location: 24080-24821 bp Feature: gene Location: 24859-25029 bp Feature: gene Location: 25379-25900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25385-25667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 253 85-25667 bp Feature: domain Description: GIIM Note: maturase Location: 25715-25895 bp Feature: domain Description: GIIM Note: maturase Location: 25715-25895 bp Feature: gene Location: 25928-26386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26177-26255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26177-26255 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: REBF01000007.1 Escherichia coli strain EC36_ST38H scaffold_6, whole genome shotgun sequence (167193 bp)
Overview 1 RT 1: 23317-29560 bp Neighborhood of RT #1 [23317, 29697] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 23317-23583 bp Feature: domain Description: Phage_integrase Location: 23383-23479 bp Feature: domain Description: Phage_integrase Location: 23383-234 79 bp Feature: gene Location: 23666-24136 bp Feature: gene Location: 24483-27692 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 25011-25500 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 25011-25500 bp Feature: domain Description: nitrilase Location: 27006-27603 bp Feature: domain Description: nitrilase Location: 27006-27603 bp Feature: gene Location: 27987-28790 bp Feature: domain Description: AbiEi_3_N Location: 28020-28281 bp Feature: domain Description: AbiEi_3_N Location: 28020-28281 bp Feature: domain Description: AbiEi_3 Location: 28293-28749 bp Feature: domain Description: AbiEi_3 Location: 28293-2874 9 bp Feature: gene Location: 28777-29697 bp Feature: domain Description: AbiEii Location: 28819-29560 bp Feature: domain Description: AbiEii Location: 28819-29560 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: REBF01000066.1 Escherichia coli strain EC36_ST38H scaffold_65, whole genome shotgun sequence (13273 bp)
Overview 1 RT 1: 2-1914 bp 2 RT 2: 11106-13129 bp Neighborhood of RT #1 [2, 1922] RVT-GII Asparaginase_2 Neighborhood of RT #2 [11106, 13272] FadR PHA02517 RVT-GII GIIM Feature: gene Location: 2-367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227-329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227-329 bp Feature: gene Location: 415-564 bp Feature: gene Location: 891-1922 bp Feature: domain Description: Asparaginase_2 Location: 981-1914 bp Feature: domain Description: Asparaginase_2 Location: 981-1914 bp Feature: gene Location: 11106-11240 bp Feature: domain Description: FadR Location: 11121-11223 bp Feature: domain Description: FadR Location: 11121-11223 bp Feature: gene Location: 11460-11900 bp Feature: domain Description: PHA02517 Location: 11463-11871 bp Feature: domain Description: PHA025 17 Location: 11463-11871 bp Feature: gene Location: 12058-13272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12124-12856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12124-1285 6 bp Feature: domain Description: GIIM Note: maturase Location: 12931-13129 bp Feature: domain Description: GIIM Note: maturase Location: 12931-13129 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Asparaginase_2 (pfam01112), FadR (COG2186), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388)

Seq: REBF01000069.1 Escherichia coli strain EC36_ST38H scaffold_68, whole genome shotgun sequence (11445 bp)
Overview 1 RT 1: 2-1073 bp Neighborhood of RT #1 [2, 1081] RVT-GII PRK10173 PRK10173 Feature: gene Location: 2-298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68-137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 8-137 bp Feature: gene Location: 337-648 bp Feature: domain Description: PRK10173 Location: 340-559 bp Feature: domain Description: PRK10173 Location: 340-559 bp Feature: gene Location: 632-1081 bp Feature: domain Description: PRK10173 Location: 635-1073 bp Feature: domain Description: PRK10173 Location: 6 35-1073 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional)