myRT

myRT report for GCA_008386455.1_ASM838645v1

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Seq: VUNV01000027.1 Pseudomonas aeruginosa strain PAE006 NODE_27_length_87020_cov_33.672551, whole genome shotgun sequence (87020 bp)
Overview 1 RT 1: 4308-15243 bp Neighborhood of RT #1 [4308, 15245] HTH_17 INT_Rci_Hp1_C RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 4308-4532 bp Feature: domain Description: HTH_17 Location: 4359-4521 bp Feature: domain Description: HTH_1 7 Location: 4359-4521 bp Feature: gene Location: 5407-6480 bp Feature: domain Description: INT_Rci_Hp1_C Location: 5917-6418 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 591 7-641 8 bp Feature: gene Location: 6782-8467 bp Feature: RT Description: RVT_N Location: 6839-7079 bp Feature: RT Description: RVT_N Location: 6839-7079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7127-7763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 27-7763 bp Feature: domain Description: GIIM Note: maturase Location: 7817-8048 bp Feature: domain Description: GIIM Note: maturase Location: 781 7-8048 bp Feature: domain Description: HNH Note: nucleases Location: 8300-8438 bp Feature: domain Description: HNH Note: nucleases Location: 8300-8438 bp Feature: gene Location: 9548-13285 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 9656-10313 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 9656-1 031 3 bp Feature: domain Description: PRK09776 Location: 10526-10997 bp Feature: domain Description: PRK09776 Location: 1 0526-1 0997 bp Feature: domain Description: PAS Location: 11087-11579 bp Feature: domain Description: PAS Location: 1 1 087-1 1 579 bp Feature: domain Description: PRK10060 Location: 11588-13235 bp Feature: domain Description: PRK1 0060 Location: 1 1 588-1 3235 bp Feature: gene Location: 13392-15245 bp Feature: domain Description: PRK05658 Location: 13404-15243 bp Feature: domain Description: PRK05658 Location: 1 3404-1 5243 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), INT_Rci_Hp1_C (cd00796), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)