myRT

myRT report for GCA_008388375.1_ASM838837v1

Download annotations/find similar RTs

Seq: RDTI01000013.1 Escherichia coli strain EC8_ST131C scaffold_12, whole genome shotgun sequence (124791 bp)
Overview 1 RT 1: 65249-69190 bp Neighborhood of RT #1 [65249, 69190] RVT-Retrons Feature: gene Location: 65249-66388 bp Feature: gene Location: 66434-66601 bp Feature: gene Location: 66623-68395 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 66782-67400 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 66782-67400 bp Feature: gene Location: 68616-68759 bp Feature: gene Location: 68951-69190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: RDTI01000040.1 Escherichia coli strain EC8_ST131C scaffold_39, whole genome shotgun sequence (18669 bp)
Overview 1 RT 1: 14920-18478 bp Neighborhood of RT #1 [14920, 18543] zinc_ribbon_11 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 14920-15420 bp Feature: domain Description: zinc_ribbon_11 Location: 15037-15355 bp Feature: domain Description: zinc_ribbon_11 Location: 15037-15355 bp Feature: gene Location: 15386-15832 bp Feature: domain Description: PHA02517 Location: 15389-15830 bp Feature: domain Description: PHA02 517 Location: 15389-15830 bp Feature: gene Location: 15949-17472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16222-16954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162 2 2 -16954 bp Feature: domain Description: GIIM Note: maturase Location: 17029-17227 bp Feature: domain Description: GIIM Note: maturase Location: 1702 9-172 2 7 bp Feature: gene Location: 17426-17851 bp Feature: gene Location: 18064-18543 bp Feature: domain Description: PHA02517 Location: 18124-18478 bp Feature: domain Description: PHA02 517 Location: 1812 4-18478 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zinc_ribbon_11 (pfam11682), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: RDTI01000008.1 Escherichia coli strain EC8_ST131C scaffold_7, whole genome shotgun sequence (170059 bp)
Overview 1 RT 1: 3-6695 bp Neighborhood of RT #1 [3, 6697] Phage_fiber_2 Phage_fiber_2 Phage_fiber_2 Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Caudo_TAP RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 3-1640 bp Feature: domain Description: Phage_fiber_2 Location: 66-186 bp Feature: domain Description: Phage_fiber_2 Location: 66-186 bp Feature: domain Description: Phage_fiber_2 Location: 198-318 bp Feature: domain Description: Phage_fiber_2 Location: 198-3 18 bp Feature: domain Description: Phage_fiber_2 Location: 330-447 bp Feature: domain Description: Phage_fiber_2 Location: 3 3 0-447 bp Feature: domain Description: Collar Location: 963-1101 bp Feature: domain Description: Collar Location: 963 -1101 bp Feature: domain Description: Phage_fiber Location: 1152-1191 bp Feature: domain Description: Phage_fiber Location: 1152-1191 bp Feature: domain Description: Phage_fiber Location: 1248-1287 bp Feature: domain Description: Phage_fiber Location: 1248-1287 bp Feature: domain Description: Phage_fiber Location: 1443-1482 bp Feature: domain Description: Phage_fiber Location: 1443 -1482 bp Feature: domain Description: Phage_fiber Location: 1488-1521 bp Feature: domain Description: Phage_fiber Location: 1488-1521 bp Feature: gene Location: 1640-2224 bp Feature: domain Description: Caudo_TAP Location: 1856-2213 bp Feature: domain Description: Caudo_TAP Location: 1856-2213 bp Feature: gene Location: 2669-4273 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2960-3551 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2960-3 551 bp Feature: domain Description: TIR_2 Location: 3878-4211 bp Feature: domain Description: TIR_2 Location: 3 878-4211 bp Feature: gene Location: 4631-4891 bp Feature: domain Description: PRK10597 Location: 4634-4874 bp Feature: domain Description: PRK10597 Location: 463 4-4874 bp Feature: gene Location: 5111-6697 bp Feature: domain Description: prfC Location: 5129-6695 bp Feature: domain Description: prfC Location: 5129-6695 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Caudo_TAP (pfam02413), RVT-Retrons, TIR_2 (pfam13676), Phage_fiber_2 (pfam03406), Collar (pfam07484), Phage_fiber (pfam03335), prfC (TIGR00503)