myRT

myRT report for GCA_008388555.1_ASM838855v1

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Seq: RDTP01000016.1 Escherichia coli strain EC46_ST131H scaffold_15, whole genome shotgun sequence (125092 bp)
Overview 1 RT 1: 65131-69072 bp Neighborhood of RT #1 [65131, 69072] RVT-Retrons Feature: gene Location: 65131-66270 bp Feature: gene Location: 66316-66483 bp Feature: gene Location: 66505-68277 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 66664-67282 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 66664-67282 bp Feature: gene Location: 68498-68641 bp Feature: gene Location: 68833-69072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: RDTP01000045.1 Escherichia coli strain EC46_ST131H scaffold_44, whole genome shotgun sequence (18921 bp)
Overview 1 RT 1: 14311-18425 bp Neighborhood of RT #1 [14311, 18425] DUF905 PRK13732 RVT-GII Intron_maturas2 Feature: gene Location: 14311-14544 bp Feature: domain Description: DUF905 Location: 14341-14539 bp Feature: domain Description: DUF905 Location: 14341-14539 bp Feature: gene Location: 14602-15042 bp Feature: domain Description: PRK13732 Location: 14608-15040 bp Feature: domain Description: PRK13732 Location: 14608-15040 bp Feature: gene Location: 15163-16983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15430-16261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15430-162 61 bp Feature: domain Description: Intron_maturas2 Location: 16375-16633 bp Feature: domain Description: Intron_maturas2 Location: 16375-16633 bp Feature: gene Location: 17546-18097 bp Feature: gene Location: 18123-18425 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348)

Seq: RDTP01000048.1 Escherichia coli strain EC46_ST131H scaffold_47, whole genome shotgun sequence (13914 bp)
Overview 1 RT 1: 3-3433 bp Neighborhood of RT #1 [3, 3486] PHA02517 RVT-GII GIIM PHA02517 autotrans_barl Feature: gene Location: 3-188 bp Feature: domain Description: PHA02517 Location: 9-123 bp Feature: domain Description: PHA02517 Location: 9-123 bp Feature: gene Location: 780-2303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1053-1785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1053 -1785 bp Feature: domain Description: GIIM Note: maturase Location: 1860-2058 bp Feature: domain Description: GIIM Note: maturase Location: 1860-2058 bp Feature: gene Location: 2480-2866 bp Feature: domain Description: PHA02517 Location: 2483-2864 bp Feature: domain Description: PHA02517 Location: 2483 -2864 bp Feature: gene Location: 2869-3486 bp Feature: domain Description: autotrans_barl Location: 2992-3433 bp Feature: domain Description: autotrans_barl Location: 2992-3 43 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), autotrans_barl (TIGR01414)

Seq: RDTP01000052.1 Escherichia coli strain EC46_ST131H scaffold_51, whole genome shotgun sequence (12143 bp)
Overview 1 RT 1: 712-4956 bp Neighborhood of RT #1 [712, 4956] Macro_Appr_pase Caudo_TAP RVT-UG17 SLATT_5 Feature: gene Location: 712-1614 bp Feature: domain Description: Macro_Appr_pase Location: 730-1243 bp Feature: domain Description: Macro_Appr_pase Location: 730-124 3 bp Feature: gene Location: 1623-2207 bp Feature: domain Description: Caudo_TAP Location: 1839-2196 bp Feature: domain Description: Caudo_TAP Location: 1839-2196 bp Feature: gene Location: 2320-3690 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2548-3154 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 254 8-3154 bp Feature: gene Location: 3668-4372 bp Feature: domain Description: SLATT_5 Location: 3830-4340 bp Feature: domain Description: SLATT_5 Location: 3830-4 34 0 bp Feature: gene Location: 4780-4956 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Macro_Appr_pase (cd02900), Caudo_TAP (pfam02413), RVT-UG17, SLATT_5 (pfam18160)