myRT

myRT report for GCA_008388595.1_ASM838859v1

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Seq: RDTR01000016.1 Escherichia coli strain EC44_ST131H scaffold_15, whole genome shotgun sequence (125092 bp)
Overview 1 RT 1: 65131-69072 bp Neighborhood of RT #1 [65131, 69072] RVT-Retrons Feature: gene Location: 65131-66270 bp Feature: gene Location: 66316-66483 bp Feature: gene Location: 66505-68277 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 66664-67282 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 66664-67282 bp Feature: gene Location: 68498-68641 bp Feature: gene Location: 68833-69072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: RDTR01000050.1 Escherichia coli strain EC44_ST131H scaffold_49, whole genome shotgun sequence (13914 bp)
Overview 1 RT 1: 3-3433 bp Neighborhood of RT #1 [3, 3486] PHA02517 RVT-GII GIIM PHA02517 autotrans_barl Feature: gene Location: 3-188 bp Feature: domain Description: PHA02517 Location: 9-123 bp Feature: domain Description: PHA02 517 Location: 9-12 3 bp Feature: gene Location: 780-2303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1053-1785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1053-1785 bp Feature: domain Description: GIIM Note: maturase Location: 1860-2058 bp Feature: domain Description: GIIM Note: maturase Location: 1860-2 058 bp Feature: gene Location: 2480-2866 bp Feature: domain Description: PHA02517 Location: 2483-2864 bp Feature: domain Description: PHA02 517 Location: 2 483-2 864 bp Feature: gene Location: 2869-3486 bp Feature: domain Description: autotrans_barl Location: 2992-3433 bp Feature: domain Description: autotrans_barl Location: 2 992 -3433 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), autotrans_barl (TIGR01414)

Seq: RDTR01000054.1 Escherichia coli strain EC44_ST131H scaffold_53, whole genome shotgun sequence (12143 bp)
Overview 1 RT 1: 710-4954 bp Neighborhood of RT #1 [710, 4954] Macro_Appr_pase Caudo_TAP RVT-UG17 SLATT_5 Feature: gene Location: 710-1612 bp Feature: domain Description: Macro_Appr_pase Location: 728-1241 bp Feature: domain Description: Macro_Appr_pase Location: 728-1241 bp Feature: gene Location: 1621-2205 bp Feature: domain Description: Caudo_TAP Location: 1837-2194 bp Feature: domain Description: Caudo_TAP Location: 183 7-2194 bp Feature: gene Location: 2318-3688 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2546-3152 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2546-3 152 bp Feature: gene Location: 3666-4370 bp Feature: domain Description: SLATT_5 Location: 3828-4338 bp Feature: domain Description: SLATT_5 Location: 3 828-43 3 8 bp Feature: gene Location: 4778-4954 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Macro_Appr_pase (cd02900), Caudo_TAP (pfam02413), RVT-UG17, SLATT_5 (pfam18160)

Seq: RDTR01000100.1 Escherichia coli strain EC44_ST131H scaffold_99, whole genome shotgun sequence (2663 bp)
Overview 1 RT 1: 149-1955 bp Neighborhood of RT #1 [149, 2050] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 149-2050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 416-1247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 16-124 7 bp Feature: domain Description: Intron_maturas2 Location: 1361-1619 bp Feature: domain Description: Intron_maturas2 Location: 1361-1619 bp Feature: domain Description: HNHc Note: nucleases Location: 1793-1955 bp Feature: domain Description: HNHc Note: nucleases Location: 1793-1955 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)