myRT

myRT report for GCA_008388855.1_ASM838885v1

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Seq: RDUG01000011.1 Escherichia coli strain EC290_ST127C scaffold_10, whole genome shotgun sequence (131813 bp)
Overview 1 RT 1: 128886-131066 bp Neighborhood of RT #1 [128886, 131719] HTH_29 HTH_33 DDE_3 RVT-AbiP2 Feature: gene Location: 128886-129176 bp Feature: gene Location: 129210-130247 bp Feature: domain Description: HTH_29 Location: 129306-129477 bp Feature: domain Description: HTH_29 Location: 1 29306-1 29477 bp Feature: domain Description: HTH_33 Location: 129510-129672 bp Feature: domain Description: HTH_33 Location: 1 2951 0-1 29672 bp Feature: domain Description: DDE_3 Location: 129714-130143 bp Feature: domain Description: DDE_3 Location: 1 2971 4-1 301 43 bp Feature: gene Location: 130349-131719 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 130610-131066 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1 3061 0-1 31 066 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-AbiP2

Seq: RDUG01000034.1 Escherichia coli strain EC290_ST127C scaffold_33, whole genome shotgun sequence (27432 bp)
Overview 1 RT 1: 10462-14056 bp Neighborhood of RT #1 [10462, 14121] InsE Tra5 RVT-GII GIIM PHA02517 Feature: gene Location: 10462-10761 bp Feature: domain Description: InsE Location: 10489-10756 bp Feature: domain Description: InsE Location: 10489-10756 bp Feature: gene Location: 10758-11405 bp Feature: domain Description: Tra5 Location: 10869-11379 bp Feature: domain Description: Tra5 Location: 10869-11379 bp Feature: gene Location: 11725-13248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11998-12730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11998-12 730 bp Feature: domain Description: GIIM Note: maturase Location: 12808-13003 bp Feature: domain Description: GIIM Note: maturase Location: 12 808-13003 bp Feature: gene Location: 13202-13627 bp Feature: gene Location: 13840-14121 bp Feature: domain Description: PHA02517 Location: 13846-14056 bp Feature: domain Description: PHA02 517 Location: 13846-14056 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)