myRT

myRT report for GCA_008388865.1_ASM838886v1

Download annotations/find similar RTs

Seq: RDUH01000002.1 Escherichia coli strain EC285_ST648C scaffold_1, whole genome shotgun sequence (456129 bp)
Overview 1 RT 1: 423110-425550 bp Neighborhood of RT #1 [423110, 425550] HTH_XRE RVT-Retrons Feature: gene Location: 423110-423523 bp Feature: gene Location: 423560-423868 bp Feature: domain Description: HTH_XRE Location: 423572-423737 bp Feature: domain Description: HTH_XRE Location: 423572-423737 bp Feature: gene Location: 423846-424796 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 424026-424569 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 424026-424569 bp Feature: gene Location: 424920-425357 bp Feature: gene Location: 425419-425550 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons

Seq: RDUH01000019.1 Escherichia coli strain EC285_ST648C scaffold_18, whole genome shotgun sequence (81591 bp)
Overview 1 RT 1: 36033-39915 bp Neighborhood of RT #1 [36033, 39920] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 36033-36491 bp Feature: domain Description: dut Location: 36039-36486 bp Feature: domain Description: dut Location: 36039-36486 bp Feature: gene Location: 36598-37194 bp Feature: domain Description: slmA Location: 36604-37180 bp Feature: domain Description: slmA Location: 36604-37180 bp Feature: gene Location: 37240-38199 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37375-37924 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37375-3792 4 bp Feature: gene Location: 38497-39153 bp Feature: domain Description: pyrE Location: 38515-39148 bp Feature: domain Description: pyrE Location: 38515-39148 bp Feature: gene Location: 39204-39920 bp Feature: domain Description: rph Location: 39207-39915 bp Feature: domain Description: rph Location: 392 07-39915 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: RDUH01000040.1 Escherichia coli strain EC285_ST648C scaffold_39, whole genome shotgun sequence (27039 bp)
Overview 1 RT 1: 1-1599 bp Neighborhood of RT #1 [1, 1599] RVT-GII RVT-GII GIIM Feature: gene Location: 1-474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265-343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265-3 43 bp Feature: gene Location: 502-1023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 508-790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 508-790 bp Feature: domain Description: GIIM Note: maturase Location: 838-1018 bp Feature: domain Description: GIIM Note: maturase Location: 83 8-1018 bp Feature: gene Location: 1122-1301 bp Feature: gene Location: 1411-1599 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: RDUH01000053.1 Escherichia coli strain EC285_ST648C scaffold_52, whole genome shotgun sequence (11978 bp)
Overview 1 RT 1: 1-1928 bp Neighborhood of RT #1 [1, 1936] RVT-GII Asparaginase_2 Feature: gene Location: 1-381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241-343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 1-34 3 bp Feature: gene Location: 429-578 bp Feature: gene Location: 905-1936 bp Feature: domain Description: Asparaginase_2 Location: 995-1928 bp Feature: domain Description: Asparaginase_2 Location: 995-1928 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Asparaginase_2 (pfam01112)