myRT

myRT report for GCA_008388995.1_ASM838899v1

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Seq: RDUM01000015.1 Escherichia coli strain EC274_ST38H scaffold_14, whole genome shotgun sequence (111051 bp)
Overview 1 RT 1: 22262-28505 bp Neighborhood of RT #1 [22262, 28642] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 22262-22528 bp Feature: domain Description: Phage_integrase Location: 22328-22424 bp Feature: domain Description: Phage_integrase Location: 22328-22424 bp Feature: gene Location: 22611-23081 bp Feature: gene Location: 23428-26637 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23956-24445 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23956-24445 bp Feature: domain Description: nitrilase Location: 25951-26548 bp Feature: domain Description: nitrilase Location: 25951 -26548 bp Feature: gene Location: 26932-27735 bp Feature: domain Description: AbiEi_3_N Location: 26965-27226 bp Feature: domain Description: AbiEi_3_N Location: 26965-27226 bp Feature: domain Description: AbiEi_3 Location: 27238-27694 bp Feature: domain Description: AbiEi_3 Location: 27238-27694 bp Feature: gene Location: 27722-28642 bp Feature: domain Description: AbiEii Location: 27764-28505 bp Feature: domain Description: AbiEii Location: 27764-28505 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: RDUM01000056.1 Escherichia coli strain EC274_ST38H scaffold_55, whole genome shotgun sequence (20877 bp)
Overview 1 RT 1: 2-2813 bp Neighborhood of RT #1 [2, 2821] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 2-460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 251-329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 51-32 9 bp Feature: gene Location: 488-1009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 494-776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 494-776 bp Feature: domain Description: GIIM Note: maturase Location: 824-1004 bp Feature: domain Description: GIIM Note: maturase Location: 82 4-1004 bp Feature: gene Location: 1331-1519 bp Feature: gene Location: 1559-2821 bp Feature: domain Description: YesM Location: 2072-2813 bp Feature: domain Description: YesM Location: 2 072 -2 813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: RDUM01000065.1 Escherichia coli strain EC274_ST38H scaffold_64, whole genome shotgun sequence (26419 bp)
Overview 1 RT 1: 19236-22876 bp Neighborhood of RT #1 [19236, 22881] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 19236-19376 bp Feature: gene Location: 19710-19919 bp Feature: gene Location: 20054-21955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20321-21152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 203 21-21152 bp Feature: domain Description: Intron_maturas2 Location: 21266-21524 bp Feature: domain Description: Intron_maturas2 Location: 21266-21524 bp Feature: domain Description: HNHc Note: nucleases Location: 21698-21860 bp Feature: domain Description: HNHc Note: nucleases Location: 21698-21860 bp Feature: gene Location: 22150-22590 bp Feature: domain Description: PRK13732 Location: 22156-22588 bp Feature: domain Description: PRK13 73 2 Location: 22156-22588 bp Feature: gene Location: 22648-22881 bp Feature: domain Description: DUF905 Location: 22678-22876 bp Feature: domain Description: DUF905 Location: 22678-22876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: RDUM01000077.1 Escherichia coli strain EC274_ST38H scaffold_76, whole genome shotgun sequence (16132 bp)
Overview 1 RT 1: 3-1918 bp 2 RT 2: 11110-14347 bp Neighborhood of RT #1 [3, 1926] RVT-GII Asparaginase_2 Neighborhood of RT #2 [11110, 14347] FadR PHA02517 RVT-GII GIIM Feature: gene Location: 3-371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231-333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231-333 bp Feature: gene Location: 419-568 bp Feature: gene Location: 895-1926 bp Feature: domain Description: Asparaginase_2 Location: 985-1918 bp Feature: domain Description: Asparaginase_2 Location: 985-1918 bp Feature: gene Location: 11110-11244 bp Feature: domain Description: FadR Location: 11125-11227 bp Feature: domain Description: FadR Location: 11125-11227 bp Feature: gene Location: 11464-11904 bp Feature: domain Description: PHA02517 Location: 11467-11875 bp Feature: domain Description: PHA02517 Location: 114 67-11875 bp Feature: gene Location: 11971-13440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12244-12976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1224 4 -12976 bp Feature: domain Description: GIIM Note: maturase Location: 13051-13249 bp Feature: domain Description: GIIM Note: maturase Location: 13051-1324 9 bp Feature: gene Location: 13415-13819 bp Feature: gene Location: 13952-14347 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Asparaginase_2 (pfam01112), FadR (COG2186), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388)