myRT

myRT report for GCA_008389155.1_ASM838915v1

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Seq: RDUT01000012.1 Escherichia coli strain EC239_ST62C scaffold_11, whole genome shotgun sequence (118508 bp)
Overview 1 RT 1: 1286-5168 bp Neighborhood of RT #1 [1286, 5173] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 1286-2002 bp Feature: domain Description: rph Location: 1289-1997 bp Feature: domain Description: rph Location: 1 289-1 997 bp Feature: gene Location: 2053-2709 bp Feature: domain Description: pyrE Location: 2071-2704 bp Feature: domain Description: pyrE Location: 2071 -2704 bp Feature: gene Location: 3007-3966 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3142-3691 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31 42-3691 bp Feature: gene Location: 4012-4608 bp Feature: domain Description: slmA Location: 4018-4594 bp Feature: domain Description: slmA Location: 401 8-4594 bp Feature: gene Location: 4715-5173 bp Feature: domain Description: dut Location: 4721-5168 bp Feature: domain Description: dut Location: 4721 -51 68 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: RDUT01000166.1 Escherichia coli strain EC239_ST62C scaffold_165, whole genome shotgun sequence (985 bp)
Overview 1 RT 1: 3-982 bp Neighborhood of RT #1 [3, 982] RVT-GII Feature: gene Location: 3-329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 76-330 bp Feature: gene Location: 623-982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: RDUT01000066.1 Escherichia coli strain EC239_ST62C scaffold_65, whole genome shotgun sequence (16356 bp)
Overview 1 RT 1: 13623-15993 bp Neighborhood of RT #1 [13623, 16355] TetR_N TetR_C_28 PHA02517 RVT-GII GIIM Feature: gene Location: 13623-14201 bp Feature: domain Description: TetR_N Location: 13692-13827 bp Feature: domain Description: TetR_N Location: 13 692-13 827 bp Feature: domain Description: TetR_C_28 Location: 13902-14190 bp Feature: domain Description: TetR_C_28 Location: 13 902-14190 bp Feature: gene Location: 14492-14878 bp Feature: domain Description: PHA02517 Location: 14495-14876 bp Feature: domain Description: PHA02517 Location: 14495-14876 bp Feature: gene Location: 14922-16355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14988-15720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14988-15720 bp Feature: domain Description: GIIM Note: maturase Location: 15795-15993 bp Feature: domain Description: GIIM Note: maturase Location: 15795-15993 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TetR_N (pfam00440), TetR_C_28 (pfam17937), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: RDUT01000074.1 Escherichia coli strain EC239_ST62C scaffold_73, whole genome shotgun sequence (11447 bp)
Overview 1 RT 1: 2-1073 bp Neighborhood of RT #1 [2, 1081] RVT-GII PRK10173 PRK10173 Feature: gene Location: 2-298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68-140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68-14 0 bp Feature: gene Location: 337-648 bp Feature: domain Description: PRK10173 Location: 340-559 bp Feature: domain Description: PRK10173 Location: 34 0-559 bp Feature: gene Location: 632-1081 bp Feature: domain Description: PRK10173 Location: 635-1073 bp Feature: domain Description: PRK10173 Location: 635-1073 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional)