myRT

myRT report for GCA_008416115.1_ASM841611v1

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Seq: VVXX01000182.1 Bacteroides caccae strain BIOML-A13 scaffold182_size2488, whole genome shotgun sequence (2488 bp)
Overview 1 RT 1: 305-1984 bp Neighborhood of RT #1 [305, 2385] RVT_N RVT-GII GIIM Feature: gene Location: 305-460 bp Feature: gene Location: 658-2385 bp Feature: RT Description: RVT_N Location: 763-1006 bp Feature: RT Description: RVT_N Location: 763-1 006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1051-1699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 051 -1 699 bp Feature: domain Description: GIIM Note: maturase Location: 1750-1984 bp Feature: domain Description: GIIM Note: maturase Location: 1 750-1 984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: VVXX01000023.1 Bacteroides caccae strain BIOML-A13 scaffold23_size71504, whole genome shotgun sequence (71504 bp)
Overview 1 RT 1: 67324-68867 bp Neighborhood of RT #1 [67324, 68867] RVT-GII HTH_28 Feature: gene Location: 67324-67686 bp Feature: gene Location: 67690-67899 bp Feature: gene Location: 67929-68126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67932-68124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67932 -6812 4 bp Feature: gene Location: 68247-68537 bp Feature: domain Description: HTH_28 Location: 68271-68415 bp Feature: domain Description: HTH_2 8 Location: 682 71-68415 bp Feature: gene Location: 68715-68867 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_28 (pfam13518)

Seq: VVXX01000035.1 Bacteroides caccae strain BIOML-A13 scaffold35_size71515, whole genome shotgun sequence (71515 bp)
Overview 1 RT 1: 20459-29594 bp Neighborhood of RT #1 [20459, 29594] DUF4134 RVT_N RVT-GII GIIM DUF4134 DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Feature: gene Location: 20459-20674 bp Feature: domain Description: DUF4134 Location: 20477-20660 bp Feature: domain Description: DUF413 4 Location: 20477-20660 bp Feature: gene Location: 20799-21008 bp Feature: gene Location: 21290-22945 bp Feature: RT Description: RVT_N Location: 21347-21584 bp Feature: RT Description: RVT_N Location: 213 47-21584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21635-22283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2163 5-22283 bp Feature: domain Description: GIIM Note: maturase Location: 22340-22571 bp Feature: domain Description: GIIM Note: maturase Location: 223 40-22571 bp Feature: gene Location: 22942-23184 bp Feature: domain Description: DUF4134 Location: 23089-23179 bp Feature: domain Description: DUF413 4 Location: 23 089-23 179 bp Feature: gene Location: 23186-23518 bp Feature: domain Description: DUF4133 Location: 23204-23471 bp Feature: domain Description: DUF413 3 Location: 23 204-23 471 bp Feature: gene Location: 23515-25911 bp Feature: domain Description: Bac_Flav_CT_G Location: 23518-25900 bp Feature: domain Description: Bac_Flav_CT_G Location: 23 518-25900 bp Feature: gene Location: 26480-28303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26744-27566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26744-27566 bp Feature: domain Description: Intron_maturas2 Location: 27740-27983 bp Feature: domain Description: Intron_maturas2 Location: 27740-27983 bp Feature: domain Description: HNHc Note: nucleases Location: 28094-28265 bp Feature: domain Description: HNHc Note: nucleases Location: 28094-28265 bp Feature: gene Location: 28398-28526 bp Feature: gene Location: 28545-29594 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VVXX01000040.1 Bacteroides caccae strain BIOML-A13 scaffold40_size93008, whole genome shotgun sequence (93008 bp)
Overview 1 RT 1: 47963-53285 bp Neighborhood of RT #1 [47963, 57406] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 47963-48205 bp Feature: gene Location: 48385-48870 bp Feature: gene Location: 48867-50171 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 49077-49755 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4 9077-4 9755 bp Feature: gene Location: 50273-50491 bp Feature: gene Location: 50687-57406 bp Feature: domain Description: Laminin_G_3 Location: 52130-52208 bp Feature: domain Description: Laminin_G_3 Location: 52130-52208 bp Feature: domain Description: Laminin_G_3 Location: 52859-53285 bp Feature: domain Description: Laminin_G_3 Location: 52859-53285 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: VVXX01000047.1 Bacteroides caccae strain BIOML-A13 scaffold47_size34725, whole genome shotgun sequence (34725 bp)
Overview 1 RT 1: 29545-34703 bp Neighborhood of RT #1 [29545, 34723] DUF3876 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 29545-29859 bp Feature: domain Description: DUF3876 Location: 29599-29848 bp Feature: domain Description: DUF3876 Location: 295 99-29848 bp Feature: gene Location: 29874-30956 bp Feature: domain Description: Bac_Flav_CT_G Location: 30003-30948 bp Feature: domain Description: Bac_Flav_CT_G Location: 30003-30948 bp Feature: gene Location: 30946-32754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31210-32032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31210-32032 bp Feature: domain Description: Intron_maturas2 Location: 32101-32413 bp Feature: domain Description: Intron_maturas2 Location: 32101-32413 bp Feature: domain Description: HNHc Note: nucleases Location: 32587-32728 bp Feature: domain Description: HNHc Note: nucleases Location: 325 87-32728 bp Feature: gene Location: 32762-33262 bp Feature: gene Location: 33320-34723 bp Feature: domain Description: Bac_Flav_CT_G Location: 33392-34703 bp Feature: domain Description: Bac_Flav_CT_G Location: 33392-34703 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VVXX01000054.1 Bacteroides caccae strain BIOML-A13 scaffold54_size29210, whole genome shotgun sequence (29210 bp)
Overview 1 RT 1: 57-5091 bp Neighborhood of RT #1 [57, 5771] RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G SMC_prok_B Feature: gene Location: 57-230 bp Feature: gene Location: 576-2387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 840-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 840-16 6 2 bp Feature: domain Description: Intron_maturas2 Location: 1737-2052 bp Feature: domain Description: Intron_maturas2 Location: 1737-2052 bp Feature: domain Description: HNHc Note: nucleases Location: 2208-2358 bp Feature: domain Description: HNHc Note: nucleases Location: 2208-2358 bp Feature: gene Location: 2444-3010 bp Feature: domain Description: Bac_Flav_CT_G Location: 2477-2897 bp Feature: domain Description: Bac_Flav_CT_G Location: 2477-2897 bp Feature: gene Location: 3231-5771 bp Feature: domain Description: SMC_prok_B Location: 4779-5091 bp Feature: domain Description: SMC_prok_B Location: 4779-5091 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), SMC_prok_B (TIGR02168), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VVXX01000009.1 Bacteroides caccae strain BIOML-A13 scaffold9_size153936, whole genome shotgun sequence (153936 bp)
Overview 1 RT 1: 95055-99923 bp Neighborhood of RT #1 [95055, 99923] Bac_Flav_CT_G Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 95055-95678 bp Feature: domain Description: Bac_Flav_CT_G Location: 95058-95676 bp Feature: domain Description: Bac_Flav_CT_G Location: 95058-9567 6 bp Feature: gene Location: 95736-96950 bp Feature: domain Description: Bac_Flav_CT_G Location: 95739-96894 bp Feature: domain Description: Bac_Flav_CT_G Location: 957 39-96894 bp Feature: gene Location: 97521-99167 bp Feature: RT Description: RVT_N Location: 97575-97818 bp Feature: RT Description: RVT_N Location: 97 57 5-97 818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97863-98508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97 863-98508 bp Feature: domain Description: GIIM Note: maturase Location: 98562-98793 bp Feature: domain Description: GIIM Note: maturase Location: 98562-987 93 bp Feature: gene Location: 99176-99769 bp Feature: domain Description: Bac_Flav_CT_G Location: 99293-99752 bp Feature: domain Description: Bac_Flav_CT_G Location: 99293-997 52 bp Feature: gene Location: 99792-99923 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)