myRT

myRT report for GCA_008416195.1_ASM841619v1

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Seq: VVXS01000015.1 Bacteroides caccae strain BIOML-A6 scaffold15_size104791, whole genome shotgun sequence (104791 bp)
Overview 1 RT 1: 95661-97204 bp Neighborhood of RT #1 [95661, 97204] RVT-GII HTH_28 Feature: gene Location: 95661-96023 bp Feature: gene Location: 96027-96236 bp Feature: gene Location: 96266-96463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96269-96461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96269-96461 bp Feature: gene Location: 96584-96874 bp Feature: domain Description: HTH_28 Location: 96608-96752 bp Feature: domain Description: HTH_28 Location: 96608-96752 bp Feature: gene Location: 97052-97204 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_28 (pfam13518)

Seq: VVXS01000018.1 Bacteroides caccae strain BIOML-A6 scaffold18_size89828, whole genome shotgun sequence (89828 bp)
Overview 1 RT 1: 84648-89806 bp Neighborhood of RT #1 [84648, 89826] DUF3876 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 84648-84962 bp Feature: domain Description: DUF3876 Location: 84702-84951 bp Feature: domain Description: DUF3876 Location: 84702 -84951 bp Feature: gene Location: 84977-86059 bp Feature: domain Description: Bac_Flav_CT_G Location: 85106-86051 bp Feature: domain Description: Bac_Flav_CT_G Location: 85106-86051 bp Feature: gene Location: 86049-87857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86313-87135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86313-87135 bp Feature: domain Description: Intron_maturas2 Location: 87204-87516 bp Feature: domain Description: Intron_maturas2 Location: 872 04-87516 bp Feature: domain Description: HNHc Note: nucleases Location: 87690-87831 bp Feature: domain Description: HNHc Note: nucleases Location: 87690-87831 bp Feature: gene Location: 87865-88365 bp Feature: gene Location: 88423-89826 bp Feature: domain Description: Bac_Flav_CT_G Location: 88495-89806 bp Feature: domain Description: Bac_Flav_CT_G Location: 88495-89806 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VVXS01000021.1 Bacteroides caccae strain BIOML-A6 scaffold21_size82899, whole genome shotgun sequence (82899 bp)
Overview 1 RT 1: 32885-38207 bp Neighborhood of RT #1 [32885, 42328] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 32885-33127 bp Feature: gene Location: 33307-33792 bp Feature: gene Location: 33789-35093 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 33999-34677 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 3 999-3 4677 bp Feature: gene Location: 35195-35413 bp Feature: gene Location: 35609-42328 bp Feature: domain Description: Laminin_G_3 Location: 37052-37130 bp Feature: domain Description: Laminin_G_3 Location: 3 7052-3 713 0 bp Feature: domain Description: Laminin_G_3 Location: 37781-38207 bp Feature: domain Description: Laminin_G_3 Location: 3 7781-3 8207 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: VVXS01000025.1 Bacteroides caccae strain BIOML-A6 scaffold25_size71631, whole genome shotgun sequence (71631 bp)
Overview 1 RT 1: 20461-29596 bp Neighborhood of RT #1 [20461, 29596] DUF4134 RVT_N RVT-GII GIIM DUF4134 DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Feature: gene Location: 20461-20676 bp Feature: domain Description: DUF4134 Location: 20479-20662 bp Feature: domain Description: DUF4 134 Location: 204 79-20662 bp Feature: gene Location: 20801-21010 bp Feature: gene Location: 21292-22947 bp Feature: RT Description: RVT_N Location: 21349-21586 bp Feature: RT Description: RVT_N Location: 2134 9-21586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21637-22285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21637-22285 bp Feature: domain Description: GIIM Note: maturase Location: 22342-22573 bp Feature: domain Description: GIIM Note: maturase Location: 2234 2-22573 bp Feature: gene Location: 22944-23186 bp Feature: domain Description: DUF4134 Location: 23091-23181 bp Feature: domain Description: DUF4 134 Location: 23091-23181 bp Feature: gene Location: 23188-23520 bp Feature: domain Description: DUF4133 Location: 23206-23473 bp Feature: domain Description: DUF4 133 Location: 23206-234 73 bp Feature: gene Location: 23517-25913 bp Feature: domain Description: Bac_Flav_CT_G Location: 23520-25902 bp Feature: domain Description: Bac_Flav_CT_G Location: 23520-25902 bp Feature: gene Location: 26482-28305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26746-27568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2674 6-27568 bp Feature: domain Description: Intron_maturas2 Location: 27742-27985 bp Feature: domain Description: Intron_maturas2 Location: 2774 2-27985 bp Feature: domain Description: HNHc Note: nucleases Location: 28096-28267 bp Feature: domain Description: HNHc Note: nucleases Location: 28096-28267 bp Feature: gene Location: 28400-28528 bp Feature: gene Location: 28547-29596 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VVXS01000064.1 Bacteroides caccae strain BIOML-A6 scaffold64_size2493, whole genome shotgun sequence (2493 bp)
Overview 1 RT 1: 107-2437 bp Neighborhood of RT #1 [107, 2437] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 107-1918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371-1193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371-1193 bp Feature: domain Description: Intron_maturas2 Location: 1268-1583 bp Feature: domain Description: Intron_maturas2 Location: 1268-15 83 bp Feature: domain Description: HNHc Note: nucleases Location: 1739-1889 bp Feature: domain Description: HNHc Note: nucleases Location: 1739-1889 bp Feature: gene Location: 2264-2437 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VVXS01000065.1 Bacteroides caccae strain BIOML-A6 scaffold65_size2488, whole genome shotgun sequence (2488 bp)
Overview 1 RT 1: 104-2485 bp Neighborhood of RT #1 [104, 2485] RVT_N RVT-GII GIIM Feature: gene Location: 104-1831 bp Feature: RT Description: RVT_N Location: 209-452 bp Feature: RT Description: RVT_N Location: 209-452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 497-1145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 497-1145 bp Feature: domain Description: GIIM Note: maturase Location: 1196-1430 bp Feature: domain Description: GIIM Note: maturase Location: 1196 -1430 bp Feature: gene Location: 2163-2318 bp Feature: gene Location: 2339-2485 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: VVXS01000008.1 Bacteroides caccae strain BIOML-A6 scaffold8_size197761, whole genome shotgun sequence (197761 bp)
Overview 1 RT 1: 62477-67345 bp Neighborhood of RT #1 [62477, 67345] Bac_Flav_CT_G Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 62477-63100 bp Feature: domain Description: Bac_Flav_CT_G Location: 62480-63098 bp Feature: domain Description: Bac_Flav_CT_G Location: 62480-63098 bp Feature: gene Location: 63158-64372 bp Feature: domain Description: Bac_Flav_CT_G Location: 63161-64316 bp Feature: domain Description: Bac_Flav_CT_G Location: 63161-64316 bp Feature: gene Location: 64943-66589 bp Feature: RT Description: RVT_N Location: 64997-65240 bp Feature: RT Description: RVT_N Location: 64997 -65240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65285-65930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65285-65930 bp Feature: domain Description: GIIM Note: maturase Location: 65984-66215 bp Feature: domain Description: GIIM Note: maturase Location: 65984-66215 bp Feature: gene Location: 66598-67191 bp Feature: domain Description: Bac_Flav_CT_G Location: 66715-67174 bp Feature: domain Description: Bac_Flav_CT_G Location: 667 15-67 17 4 bp Feature: gene Location: 67214-67345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)