myRT

myRT report for GCA_008416385.1_ASM841638v1

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Seq: VVXJ01000020.1 Alistipes shahii strain BIOML-A1 scaffold20_size69713, whole genome shotgun sequence (69713 bp)
Overview 1 RT 1: 59104-68930 bp Neighborhood of RT #1 [59104, 69208] DUF1896 N6_Mtase COG4646 matK RVT-GII Intron_maturas2 COG4646 HELICc YbjD YbjD Feature: gene Location: 59104-59544 bp Feature: domain Description: DUF1896 Location: 59122-59539 bp Feature: domain Description: DUF1 896 Location: 591 22-59539 bp Feature: gene Location: 59735-62299 bp Feature: domain Description: N6_Mtase Location: 59828-60431 bp Feature: domain Description: N6_Mtase Location: 59828-60431 bp Feature: domain Description: COG4646 Location: 61406-62288 bp Feature: domain Description: COG4646 Location: 61 406-62288 bp Feature: gene Location: 62852-64654 bp Feature: domain Description: matK Location: 62921-63008 bp Feature: domain Description: matK Location: 62921 -63008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63116-63938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 631 1 6-63938 bp Feature: domain Description: Intron_maturas2 Location: 64088-64322 bp Feature: domain Description: Intron_maturas2 Location: 64088-64322 bp Feature: gene Location: 64641-67445 bp Feature: domain Description: COG4646 Location: 64755-65748 bp Feature: domain Description: COG4646 Location: 64755-65748 bp Feature: domain Description: HELICc Location: 66117-66303 bp Feature: domain Description: HELICc Location: 661 1 7-66303 bp Feature: gene Location: 67580-69208 bp Feature: domain Description: YbjD Location: 67583-67727 bp Feature: domain Description: YbjD Location: 67583-67727 bp Feature: domain Description: YbjD Location: 68387-68930 bp Feature: domain Description: YbjD Location: 68387-68930 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1896 (pfam08989), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348), HELICc (smart00490), YbjD (COG3593)

Seq: VVXJ01000022.1 Alistipes shahii strain BIOML-A1 scaffold22_size63663, whole genome shotgun sequence (63663 bp)
Overview 1 RT 1: 491-5148 bp Neighborhood of RT #1 [491, 5159] DUF3408 RVT-GII Intron_maturas2 HNHc Relaxase bac_FRK Feature: gene Location: 491-1009 bp Feature: domain Description: DUF3408 Location: 554-989 bp Feature: domain Description: DUF3408 Location: 554-989 bp Feature: gene Location: 1466-1753 bp Feature: gene Location: 2443-4107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2563-3385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 563-3385 bp Feature: domain Description: Intron_maturas2 Location: 3481-3760 bp Feature: domain Description: Intron_maturas2 Location: 3481-3760 bp Feature: domain Description: HNHc Note: nucleases Location: 3937-4084 bp Feature: domain Description: HNHc Note: nucleases Location: 3937-4084 bp Feature: gene Location: 4360-4776 bp Feature: domain Description: Relaxase Location: 4456-4759 bp Feature: domain Description: Relaxase Location: 4456-4759 bp Feature: gene Location: 4893-5159 bp Feature: domain Description: bac_FRK Location: 4902-5148 bp Feature: domain Description: bac_FRK Location: 4902 -5148 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Relaxase (pfam03432), bac_FRK (cd01167), DUF3408 (pfam11888)

Seq: VVXJ01000033.1 Alistipes shahii strain BIOML-A1 scaffold38_size28253, whole genome shotgun sequence (28253 bp)
Overview 1 RT 1: 2302-8597 bp Neighborhood of RT #1 [2302, 8608] DUF4134 RVT-GII Intron_maturas2 HNHc DUF4133 Bac_Flav_CT_G Feature: gene Location: 2302-2838 bp Feature: gene Location: 2982-3278 bp Feature: domain Description: DUF4134 Location: 3000-3273 bp Feature: domain Description: DUF413 4 Location: 3 000-3 273 bp Feature: gene Location: 3896-5713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4160-4982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4160-4982 bp Feature: domain Description: Intron_maturas2 Location: 5057-5384 bp Feature: domain Description: Intron_maturas2 Location: 5057-53 84 bp Feature: domain Description: HNHc Note: nucleases Location: 5537-5687 bp Feature: domain Description: HNHc Note: nucleases Location: 553 7-5687 bp Feature: gene Location: 5623-6105 bp Feature: domain Description: DUF4133 Location: 5827-6055 bp Feature: domain Description: DUF413 3 Location: 5827-6055 bp Feature: gene Location: 6110-8608 bp Feature: domain Description: Bac_Flav_CT_G Location: 6113-8597 bp Feature: domain Description: Bac_Flav_CT_G Location: 6113 -8597 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783)

Seq: VVXJ01000071.1 Alistipes shahii strain BIOML-A1 scaffold417_size2530, whole genome shotgun sequence (2530 bp)
Overview 1 RT 1: 124-2071 bp Neighborhood of RT #1 [124, 2094] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 124-2094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 547-1369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54 7-1369 bp Feature: domain Description: Intron_maturas2 Location: 1531-1750 bp Feature: domain Description: Intron_maturas2 Location: 1531-1750 bp Feature: domain Description: HNHc Note: nucleases Location: 1915-2071 bp Feature: domain Description: HNHc Note: nucleases Location: 1915-2071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VVXJ01000073.1 Alistipes shahii strain BIOML-A1 scaffold424_size2416, whole genome shotgun sequence (2416 bp)
Overview 1 RT 1: 104-2318 bp Neighborhood of RT #1 [104, 2318] RVT_N RVT-GII GIIM Feature: gene Location: 104-1831 bp Feature: RT Description: RVT_N Location: 209-452 bp Feature: RT Description: RVT_N Location: 209-45 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 497-1145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 497-1145 bp Feature: domain Description: GIIM Note: maturase Location: 1196-1430 bp Feature: domain Description: GIIM Note: maturase Location: 1196-1430 bp Feature: gene Location: 2163-2318 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: VVXJ01000005.1 Alistipes shahii strain BIOML-A1 scaffold5_size114561, whole genome shotgun sequence (114561 bp)
Overview 1 RT 1: 6464-10460 bp Neighborhood of RT #1 [6464, 10460] Phage_holin_4_1 RVT-DGRs Avd_like Feature: gene Location: 6464-6940 bp Feature: domain Description: Phage_holin_4_1 Location: 6536-6791 bp Feature: domain Description: Phage_holin_4_1 Location: 6 536 -6 791 bp Feature: gene Location: 6964-7224 bp Feature: gene Location: 7202-8596 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7526-8288 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7526 -8288 bp Feature: gene Location: 8647-9042 bp Feature: domain Description: Avd_like Location: 8668-8980 bp Feature: domain Description: Avd_like Location: 86 6 8-8980 bp Feature: gene Location: 9114-10460 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs, Avd_like (cd16376)