myRT

myRT report for GCA_008421235.1_ASM842123v1

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Seq: VVND01000020.1 Alistipes finegoldii strain BIOML-A1 scaffold20_size47986, whole genome shotgun sequence (47986 bp)
Overview 1 RT 1: 39046-47824 bp Neighborhood of RT #1 [39046, 47824] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc DUF4134 Feature: gene Location: 39046-39405 bp Feature: domain Description: DUF3876 Location: 39127-39376 bp Feature: domain Description: DUF3876 Location: 391 27-39376 bp Feature: gene Location: 39417-41120 bp Feature: domain Description: Bac_Flav_CT_G Location: 39537-41097 bp Feature: domain Description: Bac_Flav_CT_G Location: 39537-41 097 bp Feature: gene Location: 41117-42778 bp Feature: RT Description: RVT_N Location: 41171-41414 bp Feature: RT Description: RVT_N Location: 41 1 71 -41 41 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41459-42107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 459-421 07 bp Feature: domain Description: GIIM Note: maturase Location: 42161-42392 bp Feature: domain Description: GIIM Note: maturase Location: 421 61 -42392 bp Feature: gene Location: 42860-43240 bp Feature: gene Location: 43362-44306 bp Feature: domain Description: Bac_Flav_CT_G Location: 43365-44292 bp Feature: domain Description: Bac_Flav_CT_G Location: 43365-44292 bp Feature: gene Location: 44368-44598 bp Feature: gene Location: 44703-46520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44967-45789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44967-45789 bp Feature: domain Description: Intron_maturas2 Location: 45864-46191 bp Feature: domain Description: Intron_maturas2 Location: 45864-461 91 bp Feature: domain Description: HNHc Note: nucleases Location: 46344-46494 bp Feature: domain Description: HNHc Note: nucleases Location: 46344-46494 bp Feature: gene Location: 47138-47434 bp Feature: domain Description: DUF4134 Location: 47156-47429 bp Feature: domain Description: DUF41 34 Location: 471 56-47429 bp Feature: gene Location: 47579-47824 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4134 (pfam13572)

Seq: VVND01000023.1 Alistipes finegoldii strain BIOML-A1 scaffold23_size36324, whole genome shotgun sequence (36324 bp)
Overview 1 RT 1: 9266-12559 bp Neighborhood of RT #1 [9266, 12579] RVT-GII Intron_maturas2 HNHc Relaxase Feature: gene Location: 9266-9556 bp Feature: gene Location: 9981-10145 bp Feature: gene Location: 10246-11910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10366-11188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10366-11188 bp Feature: domain Description: Intron_maturas2 Location: 11329-11563 bp Feature: domain Description: Intron_maturas2 Location: 1132 9-11563 bp Feature: domain Description: HNHc Note: nucleases Location: 11740-11887 bp Feature: domain Description: HNHc Note: nucleases Location: 11740-11887 bp Feature: gene Location: 11897-12178 bp Feature: gene Location: 12226-12579 bp Feature: domain Description: Relaxase Location: 12286-12559 bp Feature: domain Description: Relaxase Location: 12 2 86-12 559 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Relaxase (pfam03432)

Seq: VVND01000007.1 Alistipes finegoldii strain BIOML-A1 scaffold7_size120148, whole genome shotgun sequence (120148 bp)
Overview 1 RT 1: 79973-90068 bp Neighborhood of RT #1 [79973, 90127] Laminin_G_3 Laminin_G_3 CotH CotH RVT-DGRs Dam Feature: gene Location: 79973-80263 bp Feature: gene Location: 80267-86911 bp Feature: domain Description: Laminin_G_3 Location: 81821-81926 bp Feature: domain Description: Laminin_G_3 Location: 81821-81926 bp Feature: domain Description: Laminin_G_3 Location: 82574-82952 bp Feature: domain Description: Laminin_G_3 Location: 82574-82952 bp Feature: domain Description: CotH Location: 83213-83435 bp Feature: domain Description: CotH Location: 83 213 -83 43 5 bp Feature: domain Description: CotH Location: 83765-84083 bp Feature: domain Description: CotH Location: 83 765-84083 bp Feature: gene Location: 87144-88634 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 87537-88221 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8753 7-88221 bp Feature: gene Location: 88631-89107 bp Feature: gene Location: 89306-90127 bp Feature: domain Description: Dam Location: 89309-90068 bp Feature: domain Description: Dam Location: 893 09-90068 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), CotH (pfam08757), RVT-DGRs, Dam (pfam05869)

Seq: VVND01000009.1 Alistipes finegoldii strain BIOML-A1 scaffold9_size114003, whole genome shotgun sequence (114003 bp)
Overview 1 RT 1: 61442-65842 bp Neighborhood of RT #1 [61442, 65850] thioredoxin RVT_N RVT-GII GIIM HTH_28 HTH_28 PHA02517 Feature: gene Location: 61442-61606 bp Feature: gene Location: 61749-62108 bp Feature: domain Description: thioredoxin Location: 61827-62091 bp Feature: domain Description: thioredoxin Location: 61827-62091 bp Feature: gene Location: 63064-64740 bp Feature: RT Description: RVT_N Location: 63121-63364 bp Feature: RT Description: RVT_N Location: 63121-63364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63409-64057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 634 09-64 057 bp Feature: domain Description: GIIM Note: maturase Location: 64108-64342 bp Feature: domain Description: GIIM Note: maturase Location: 64 108-64 34 2 bp Feature: gene Location: 64682-65338 bp Feature: domain Description: HTH_28 Location: 64847-64994 bp Feature: domain Description: HTH_28 Location: 64 84 7-64 994 bp Feature: domain Description: HTH_28 Location: 65006-65162 bp Feature: domain Description: HTH_28 Location: 65006-65162 bp Feature: gene Location: 65380-65850 bp Feature: domain Description: PHA02517 Location: 65386-65842 bp Feature: domain Description: PHA02517 Location: 65386-6584 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT thioredoxin (TIGR01068), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HTH_28 (pfam13518), PHA02517 (putative transposase OrfB; Reviewed)