myRT

myRT report for GCA_008534395.1_ASM853439v1

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Seq: SHMQ01000002.1 Candidatus Acidulodesulfobacterium acidiphilum isolate AP4 contig002, whole genome shotgun sequence (138309 bp)
Overview 1 RT 1: 75232-79906 bp Neighborhood of RT #1 [75232, 79906] M20_peptT_like PepT-like RVT-Retrons COG3885 Feature: gene Location: 75232-75984 bp Feature: domain Description: M20_peptT_like Location: 75343-75469 bp Feature: domain Description: M20_peptT_like Location: 75343-75469 bp Feature: domain Description: PepT-like Location: 75745-75814 bp Feature: domain Description: PepT-like Location: 75745-7581 4 bp Feature: gene Location: 75985-76845 bp Feature: gene Location: 76915-77634 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 76936-77482 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 76936-77482 bp Feature: gene Location: 79073-79348 bp Feature: domain Description: COG3885 Location: 79142-79313 bp Feature: domain Description: COG3885 Location: 791 42-7931 3 bp Feature: gene Location: 79517-79906 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT M20_peptT_like (cd05683), PepT-like (TIGR01883), RVT-Retrons, COG3885 (Aromatic ring-opening dioxygenase, LigB subunit )

Seq: SHMQ01000005.1 Candidatus Acidulodesulfobacterium acidiphilum isolate AP4 contig005, whole genome shotgun sequence (112850 bp)
Overview 1 RT 1: 29286-33928 bp Neighborhood of RT #1 [29286, 33928] PepT-like PepT-like RVT-Retrons Feature: gene Location: 29286-30056 bp Feature: domain Description: PepT-like Location: 29400-29526 bp Feature: domain Description: PepT-like Location: 2 9400-2 952 6 bp Feature: domain Description: PepT-like Location: 29799-29871 bp Feature: domain Description: PepT-like Location: 2 9799-2 9871 bp Feature: gene Location: 30056-31138 bp Feature: gene Location: 30985-31695 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31006-31537 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31006-31537 bp Feature: gene Location: 32507-32812 bp Feature: gene Location: 33791-33928 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PepT-like (TIGR01883), RVT-Retrons

Seq: SHMQ01000010.1 Candidatus Acidulodesulfobacterium acidiphilum isolate AP4 contig010, whole genome shotgun sequence (78975 bp)
Overview 1 RT 1: 37352-44770 bp Neighborhood of RT #1 [37352, 44793] Cas2_I_II_III RVT-CRISPR TPR COG4951 AAAA PTC1 NERD PKc Feature: gene Location: 37352-37579 bp Feature: gene Location: 37620-37898 bp Feature: domain Description: Cas2_I_II_III Location: 37629-37857 bp Feature: domain Description: Cas2_I_II_III Location: 3 7629-3 7857 bp Feature: gene Location: 37933-40989 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 38152-38725 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3 8152-3 8725 bp Feature: domain Description: TPR Location: 39259-39379 bp Feature: domain Description: TPR Location: 3 9259-3 93 79 bp Feature: domain Description: COG4951 Location: 39628-40258 bp Feature: domain Description: COG4951 Location: 3 9628-40258 bp Feature: gene Location: 41045-42481 bp Feature: domain Description: AAAA Location: 41048-42386 bp Feature: domain Description: AAAA Location: 41048-423 86 bp Feature: gene Location: 42583-44793 bp Feature: domain Description: PTC1 Location: 42685-43138 bp Feature: domain Description: PTC1 Location: 42685-43 13 8 bp Feature: domain Description: NERD Location: 43408-43591 bp Feature: domain Description: NERD Location: 43 408-43 591 bp Feature: domain Description: PKc Location: 44020-44770 bp Feature: domain Description: PKc Location: 44020-44770 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, TPR (smart00028), COG4951 (Uncharacterized protein ), AAAA (COG1672), PTC1 (COG0631), NERD (pfam08378), PKc (cd00180)

Seq: SHMQ01000020.1 Candidatus Acidulodesulfobacterium acidiphilum isolate AP4 contig020, whole genome shotgun sequence (37085 bp)
Overview 1 RT 1: 12913-17385 bp Neighborhood of RT #1 [12913, 17385] RVT-Retrons Feature: gene Location: 12913-13593 bp Feature: gene Location: 13688-13903 bp Feature: gene Location: 14108-15241 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14333-14969 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14 333-14 969 bp Feature: gene Location: 15436-16665 bp Feature: gene Location: 16693-17385 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons