myRT

myRT report for GCA_008553705.1_ASM855370v1

Download annotations/find similar RTs

Seq: VNJG01000002.1 Escherichia coli strain T75 NODE_2_length_263376_cov_46.6909, whole genome shotgun sequence (263376 bp)
Overview 1 RT 1: 111-4740 bp Neighborhood of RT #1 [111, 4742] Caudo_TAP RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 111-269 bp Feature: domain Description: Caudo_TAP Location: 126-258 bp Feature: domain Description: Caudo_TAP Location: 1 26-258 bp Feature: gene Location: 714-2318 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1005-1596 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 005-1 596 bp Feature: domain Description: TIR_2 Location: 1923-2256 bp Feature: domain Description: TIR_2 Location: 1 923-2256 bp Feature: gene Location: 2676-2936 bp Feature: domain Description: PRK10597 Location: 2679-2919 bp Feature: domain Description: PRK1 0597 Location: 2679-291 9 bp Feature: gene Location: 3156-4742 bp Feature: domain Description: prfC Location: 3174-4740 bp Feature: domain Description: prfC Location: 31 74-4740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503), RVT-Retrons, TIR_2 (pfam13676)

Seq: VNJG01000044.1 Escherichia coli strain T75 NODE_44_length_27760_cov_39.0607, whole genome shotgun sequence (27760 bp)
Overview 1 RT 1: 1481-5183 bp Neighborhood of RT #1 [1481, 5293] InsE PHA02517 RVT-GII GIIM PHA02517 Ogr_Delta Feature: gene Location: 1481-1783 bp Feature: domain Description: InsE Location: 1490-1772 bp Feature: domain Description: InsE Location: 1490-1772 bp Feature: gene Location: 1810-2235 bp Feature: domain Description: PHA02517 Location: 1834-2170 bp Feature: domain Description: PHA02 517 Location: 1834-2 170 bp Feature: gene Location: 2827-4350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3100-3832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3100-3832 bp Feature: domain Description: GIIM Note: maturase Location: 3907-4105 bp Feature: domain Description: GIIM Note: maturase Location: 3907-4105 bp Feature: gene Location: 4515-4919 bp Feature: domain Description: PHA02517 Location: 4518-4908 bp Feature: domain Description: PHA02 517 Location: 4518-4908 bp Feature: gene Location: 5033-5293 bp Feature: domain Description: Ogr_Delta Location: 5042-5183 bp Feature: domain Description: Ogr_Delta Location: 5042 -5183 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Ogr_Delta (pfam04606)

Seq: VNJG01000051.1 Escherichia coli strain T75 NODE_51_length_17963_cov_51.1148, whole genome shotgun sequence (17963 bp)
Overview 1 RT 1: 8044-11933 bp Neighborhood of RT #1 [8044, 11938] RVT-GII RVT-GII GIIM LacI PBP1_GntR Feature: gene Location: 8044-8358 bp Feature: gene Location: 8756-8953 bp Feature: gene Location: 9122-9556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9314-9530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 14-953 0 bp Feature: gene Location: 9529-10182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9532-9940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 953 2-9940 bp Feature: domain Description: GIIM Note: maturase Location: 9988-10180 bp Feature: domain Description: GIIM Note: maturase Location: 9988-10180 bp Feature: gene Location: 10558-10776 bp Feature: gene Location: 10907-11938 bp Feature: domain Description: LacI Location: 10949-11084 bp Feature: domain Description: LacI Location: 10949-11084 bp Feature: domain Description: PBP1_GntR Location: 11123-11933 bp Feature: domain Description: PBP1_GntR Location: 11123 -1193 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LacI (pfam00356), PBP1_GntR (cd01575)