myRT

myRT report for GCA_008565175.1_ASM856517v1

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Seq: VWMU01000012.1 Bacteroides salyersiae strain BIOML-A21 scaffold12_size62174, whole genome shotgun sequence (62174 bp)
Overview 1 RT 1: 52319-58822 bp Neighborhood of RT #1 [52319, 58822] Relaxase Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 52319-53614 bp Ori: KAA3722816.1 Feature: domain Description: Relaxase Location: 52496-52787 bp Feature: domain Description: Relaxase Location: 52496-52787 bp Feature: domain Description: Relaxase Location: 53096-53348 bp Feature: domain Description: Relaxase Location: 53096-53348 bp Feature: gene Location: 53889-54812 bp Ori: KAA3722817.1 Feature: domain Description: YWFCY Location: 53895-54072 bp Feature: domain Description: YWFCY Location: 53895-54072 bp Feature: gene Location: 55449-57101 bp Ori: KAA3722818.1 Gene: ltrA Feature: domain Description: RVT_N Location: 55503-55746 bp Feature: domain Description: RVT_N Location: 55503-55746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55791-56439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55791 -56439 bp Feature: domain Description: GIIM Note: maturase Location: 56493-56724 bp Feature: domain Description: GIIM Note: maturase Location: 56493-56724 bp Feature: gene Location: 57106-58311 bp Ori: KAA3722819.1 Feature: domain Description: TraG-D_C Location: 57688-58021 bp Feature: domain Description: TraG-D_C Location: 57688-58021 bp Feature: gene Location: 58427-58822 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696)

Seq: VWMU01000001.1 Bacteroides salyersiae strain BIOML-A21 scaffold1_size139003, whole genome shotgun sequence (139003 bp)
Overview 1 RT 1: 45471-56817 bp Neighborhood of RT #1 [45471, 56855] Laminin_G_3 CotH LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 45471-46637 bp Feature: gene Location: 46647-53435 bp Ori: KAA3724921.1 Feature: domain Description: Laminin_G_3 Location: 49083-49464 bp Feature: domain Description: Laminin_G_3 Location: 49083-49464 bp Feature: domain Description: CotH Location: 49725-50667 bp Feature: domain Description: CotH Location: 4972 5-50667 bp Feature: domain Description: LRR_AMN1 Location: 51192-51639 bp Feature: domain Description: LRR_AMN1 Location: 51192 -51639 bp Feature: gene Location: 53869-55164 bp Ori: KAA3724922.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 54085-54676 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 54085-54676 bp Feature: gene Location: 55166-55660 bp Feature: gene Location: 55710-56855 bp Ori: KAA3724924.1 Feature: domain Description: Arm-DNA-bind_5 Location: 55734-55980 bp Feature: domain Description: Arm-DNA-bind_5 Location: 55734-55980 bp Feature: domain Description: Phage_int_SAM_5 Location: 56019-56304 bp Feature: domain Description: Phage_int_SAM_5 Location: 56019-56304 bp Feature: domain Description: INTN1_C_like Location: 56343-56817 bp Feature: domain Description: INTN1_C_like Location: 56343-56817 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), CotH (pfam08757), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: VWMU01000555.1 Bacteroides salyersiae strain BIOML-A21 scaffold555_size1043, whole genome shotgun sequence (1043 bp)
Overview 1 RT 1: 1-1032 bp Neighborhood of RT #1 [1, 1043] RVT-CRISPR Cmr6_III-B Feature: gene Location: 1-735 bp Ori: KAA3700945.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 211-730 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 211-73 0 bp Feature: gene Location: 768-1043 bp Ori: KAA3700946.1 Gene: cmr6 Feature: domain Description: Cmr6_III-B Location: 774-1032 bp Feature: domain Description: Cmr6_III-B Location: 774-103 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cmr6_III-B (cd09661)

Seq: VWMU01000136.1 Bacteroides salyersiae strain BIOML-A21 scaffold136_size9579, whole genome shotgun sequence (9579 bp)
Overview 1 RT 1: 1918-7798 bp Neighborhood of RT #1 [1918, 9579] RVT-DGRs Laminin_G_3 CotH LRR_AMN1 Feature: gene Location: 1918-2208 bp Feature: gene Location: 2417-2899 bp Feature: gene Location: 2899-4200 bp Ori: KAA3713544.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3112-3709 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3112-3709 bp Feature: gene Location: 4392-4580 bp Feature: gene Location: 4705-9579 bp Ori: KAA3713545.1 Feature: domain Description: Laminin_G_3 Location: 5203-5590 bp Feature: domain Description: Laminin_G_3 Location: 5203-5590 bp Feature: domain Description: CotH Location: 5851-6739 bp Feature: domain Description: CotH Location: 5851-6739 bp Feature: domain Description: LRR_AMN1 Location: 7372-7798 bp Feature: domain Description: LRR_AMN1 Location: 7372-7798 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385), CotH (pfam08757), LRR_AMN1 (sd00034)

Seq: VWMU01000156.1 Bacteroides salyersiae strain BIOML-A21 scaffold156_size7497, whole genome shotgun sequence (7497 bp)
Overview 1 RT 1: 1-4525 bp Neighborhood of RT #1 [1, 4525] RVT-UG27 Feature: gene Location: 1-765 bp Feature: gene Location: 787-1248 bp Feature: gene Location: 2280-3545 bp Ori: KAA3712751.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 2469-3105 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 2469-3105 bp Feature: gene Location: 3535-3936 bp Feature: gene Location: 3923-4525 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27