myRT

myRT report for GCA_008565225.1_ASM856522v1

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Seq: VWMR01000006.1 Bacteroides salyersiae strain BIOML-A17 scaffold6_size178672, whole genome shotgun sequence (178672 bp)
Overview 1 RT 1: 52374-58877 bp Neighborhood of RT #1 [52374, 58877] Relaxase Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 52374-53669 bp Ori: KAA3740073.1 Feature: domain Description: Relaxase Location: 52551-52842 bp Feature: domain Description: Relaxase Location: 52551 -52842 bp Feature: domain Description: Relaxase Location: 53151-53403 bp Feature: domain Description: Relaxase Location: 531 51 -53403 bp Feature: gene Location: 53944-54867 bp Ori: KAA3740074.1 Feature: domain Description: YWFCY Location: 53950-54127 bp Feature: domain Description: YWFCY Location: 53950-541 27 bp Feature: gene Location: 55504-57156 bp Ori: KAA3740075.1 Gene: ltrA Feature: domain Description: RVT_N Location: 55558-55801 bp Feature: domain Description: RVT_N Location: 55558-55801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55846-56494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55846-56494 bp Feature: domain Description: GIIM Note: maturase Location: 56548-56779 bp Feature: domain Description: GIIM Note: maturase Location: 56548-56779 bp Feature: gene Location: 57161-58366 bp Ori: KAA3740076.1 Feature: domain Description: TraG-D_C Location: 57743-58076 bp Feature: domain Description: TraG-D_C Location: 57743-58076 bp Feature: gene Location: 58482-58877 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696)

Seq: VWMR01000050.1 Bacteroides salyersiae strain BIOML-A17 scaffold50_size36442, whole genome shotgun sequence (36442 bp)
Overview 1 RT 1: 33997-36232 bp Neighborhood of RT #1 [33997, 36270] RVT-CRISPR Cas1_I-II-III Feature: gene Location: 33997-36270 bp Ori: KAA3729530.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 34207-34810 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 342 07-34810 bp Feature: domain Description: Cas1_I-II-III Location: 35272-36232 bp Feature: domain Description: Cas1_I-II-III Location: 352 72 -362 32 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656)

Seq: VWMR01000009.1 Bacteroides salyersiae strain BIOML-A17 scaffold9_size151861, whole genome shotgun sequence (151861 bp)
Overview 1 RT 1: 44845-56191 bp Neighborhood of RT #1 [44845, 56229] Laminin_G_3 CotH LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 44845-46011 bp Feature: gene Location: 46021-52809 bp Ori: KAA3738505.1 Feature: domain Description: Laminin_G_3 Location: 48457-48838 bp Feature: domain Description: Laminin_G_3 Location: 48457-4883 8 bp Feature: domain Description: CotH Location: 49099-50041 bp Feature: domain Description: CotH Location: 49099-50041 bp Feature: domain Description: LRR_AMN1 Location: 50566-51013 bp Feature: domain Description: LRR_AMN1 Location: 50566-51013 bp Feature: gene Location: 53243-54538 bp Ori: KAA3738506.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 53459-54050 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 53 459-54050 bp Feature: gene Location: 54540-55034 bp Feature: gene Location: 55084-56229 bp Ori: KAA3738508.1 Feature: domain Description: Arm-DNA-bind_5 Location: 55108-55354 bp Feature: domain Description: Arm-DNA-bind_5 Location: 55108-553 54 bp Feature: domain Description: Phage_int_SAM_5 Location: 55393-55678 bp Feature: domain Description: Phage_int_SAM_5 Location: 553 93 -55678 bp Feature: domain Description: INTN1_C_like Location: 55717-56191 bp Feature: domain Description: INTN1_C_like Location: 55717-56191 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), CotH (pfam08757), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: VWMR01000020.1 Bacteroides salyersiae strain BIOML-A17 scaffold20_size99768, whole genome shotgun sequence (99768 bp)
Overview 1 RT 1: 9589-14443 bp Neighborhood of RT #1 [9589, 14443] RVT-UG27 Feature: gene Location: 9589-10191 bp Feature: gene Location: 10178-10579 bp Feature: gene Location: 10569-11834 bp Ori: KAA3734281.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 10758-11394 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 10758-11394 bp Feature: gene Location: 12866-13327 bp Feature: gene Location: 13349-14443 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: VWMR01000018.1 Bacteroides salyersiae strain BIOML-A17 scaffold18_size101434, whole genome shotgun sequence (101434 bp)
Overview 1 RT 1: 65593-74164 bp Neighborhood of RT #1 [65593, 75945] RVT-DGRs CotH LRR_AMN1 Feature: gene Location: 65593-65883 bp Feature: gene Location: 66092-66574 bp Feature: gene Location: 66574-67875 bp Ori: KAA3734788.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 66787-67384 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 66787-67384 bp Feature: gene Location: 68067-68255 bp Feature: gene Location: 68380-75945 bp Ori: KAA3734789.1 Feature: domain Description: CotH Location: 72217-73105 bp Feature: domain Description: CotH Location: 72217-73105 bp Feature: domain Description: LRR_AMN1 Location: 73738-74164 bp Feature: domain Description: LRR_AMN1 Location: 73738-74164 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, CotH (pfam08757), LRR_AMN1 (sd00034)

Seq: VWMR01000035.1 Bacteroides salyersiae strain BIOML-A17 scaffold35_size64896, whole genome shotgun sequence (64896 bp)
Overview 1 RT 1: 56113-60363 bp Neighborhood of RT #1 [56113, 60363] RVT-DGRs Feature: gene Location: 56113-56427 bp Feature: gene Location: 56429-56818 bp Feature: gene Location: 56793-57839 bp Ori: KAA3731186.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 57000-57627 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 57000-576 27 bp Feature: gene Location: 58138-59565 bp Feature: gene Location: 59602-60363 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs