myRT

myRT report for GCA_008565335.1_ASM856533v1

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Seq: VWMN01000047.1 Bacteroides salyersiae strain BIOML-A13 scaffold47_size23800, whole genome shotgun sequence (23800 bp)
Overview 1 RT 1: 19074-22549 bp Neighborhood of RT #1 [19074, 22587] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III Feature: gene Location: 19074-19496 bp Ori: KAA3743702.1 Feature: domain Description: Cas_Cmr5 Location: 19146-19473 bp Feature: domain Description: Cas_Cmr5 Location: 1 91 46-1 9473 bp Feature: gene Location: 19493-20281 bp Ori: KAA3743703.1 Gene: cmr6 Feature: domain Description: Cmr6_III-B Location: 19574-20270 bp Feature: domain Description: Cmr6_III-B Location: 1 9574-20270 bp Feature: gene Location: 20314-22587 bp Ori: KAA3743704.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 20524-21127 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 20524-21 1 27 bp Feature: domain Description: Cas1_I-II-III Location: 21589-22549 bp Feature: domain Description: Cas1 _I-II-III Location: 21 589-22549 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656)

Seq: VWMN01000028.1 Bacteroides salyersiae strain BIOML-A13 scaffold28_size71759, whole genome shotgun sequence (71759 bp)
Overview 1 RT 1: 52374-58877 bp Neighborhood of RT #1 [52374, 58877] Relaxase Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 52374-53669 bp Ori: KAA3746087.1 Feature: domain Description: Relaxase Location: 52551-52842 bp Feature: domain Description: Relaxase Location: 52 551-52 842 bp Feature: domain Description: Relaxase Location: 53151-53403 bp Feature: domain Description: Relaxase Location: 53151-53403 bp Feature: gene Location: 53944-54867 bp Ori: KAA3746088.1 Feature: domain Description: YWFCY Location: 53950-54127 bp Feature: domain Description: YWFCY Location: 53950-5412 7 bp Feature: gene Location: 55504-57156 bp Ori: KAA3746089.1 Gene: ltrA Feature: domain Description: RVT_N Location: 55558-55801 bp Feature: domain Description: RVT_N Location: 55558-55801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55846-56494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55846-56494 bp Feature: domain Description: GIIM Note: maturase Location: 56548-56779 bp Feature: domain Description: GIIM Note: maturase Location: 56548-56779 bp Feature: gene Location: 57161-58366 bp Ori: KAA3746090.1 Feature: domain Description: TraG-D_C Location: 57743-58076 bp Feature: domain Description: TraG-D_C Location: 57743-58076 bp Feature: gene Location: 58482-58877 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696)

Seq: VWMN01000002.1 Bacteroides salyersiae strain BIOML-A13 scaffold2_size349473, whole genome shotgun sequence (349473 bp)
Overview 1 RT 1: 176014-180264 bp Neighborhood of RT #1 [176014, 180264] RVT-DGRs Feature: gene Location: 176014-176328 bp Feature: gene Location: 176330-176719 bp Feature: gene Location: 176694-177740 bp Ori: KAA3754832.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 176901-177528 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 176901-177528 bp Feature: gene Location: 178039-179466 bp Feature: gene Location: 179503-180264 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: VWMN01000011.1 Bacteroides salyersiae strain BIOML-A13 scaffold11_size187668, whole genome shotgun sequence (187668 bp)
Overview 1 RT 1: 95504-106888 bp Neighborhood of RT #1 [95504, 106888] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Laminin_G_3 CotH LRR_AMN1 Feature: gene Location: 95504-96649 bp Ori: KAA3751249.1 Feature: domain Description: Arm-DNA-bind_5 Location: 95528-95774 bp Feature: domain Description: Arm-DNA-bind_5 Location: 95528-95774 bp Feature: domain Description: Phage_int_SAM_5 Location: 95813-96098 bp Feature: domain Description: Phage_int_SAM_5 Location: 95813-96098 bp Feature: domain Description: INTN1_C_like Location: 96137-96611 bp Feature: domain Description: INTN1_C_like Location: 96137-96611 bp Feature: gene Location: 96699-97193 bp Feature: gene Location: 97195-98490 bp Ori: KAA3751251.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 97411-98002 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 974 11-98002 bp Feature: gene Location: 98924-105712 bp Ori: KAA3751252.1 Feature: domain Description: Laminin_G_3 Location: 101360-101741 bp Feature: domain Description: Laminin_G_3 Location: 101360-10174 1 bp Feature: domain Description: CotH Location: 102002-102944 bp Feature: domain Description: CotH Location: 102002-10294 4 bp Feature: domain Description: LRR_AMN1 Location: 103469-103916 bp Feature: domain Description: LRR_AMN1 Location: 1034 69-103916 bp Feature: gene Location: 105722-106888 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-DGRs, Laminin_G_3 (pfam13385), CotH (pfam08757), LRR_AMN1 (sd00034)

Seq: VWMN01000030.1 Bacteroides salyersiae strain BIOML-A13 scaffold30_size64485, whole genome shotgun sequence (64485 bp)
Overview 1 RT 1: 49874-54728 bp Neighborhood of RT #1 [49874, 54728] RVT-UG27 Feature: gene Location: 49874-50968 bp Feature: gene Location: 50990-51451 bp Feature: gene Location: 52483-53748 bp Ori: KAA3745738.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 52672-53308 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 5 2672-5 3308 bp Feature: gene Location: 53738-54139 bp Feature: gene Location: 54126-54728 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: VWMN01000006.1 Bacteroides salyersiae strain BIOML-A13 scaffold6_size239414, whole genome shotgun sequence (239414 bp)
Overview 1 RT 1: 179621-189973 bp Neighborhood of RT #1 [179621, 189973] CotH LRR_AMN1 RVT-DGRs Feature: gene Location: 179621-187186 bp Ori: KAA3753259.1 Feature: domain Description: CotH Location: 183458-184346 bp Feature: domain Description: CotH Location: 183458-184346 bp Feature: domain Description: LRR_AMN1 Location: 184979-185405 bp Feature: domain Description: LRR_AMN1 Location: 184979-185405 bp Feature: gene Location: 187311-187499 bp Feature: gene Location: 187691-188992 bp Ori: KAA3753260.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 187904-188501 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 187904-188501 bp Feature: gene Location: 188992-189474 bp Feature: gene Location: 189683-189973 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CotH (pfam08757), LRR_AMN1 (sd00034), RVT-DGRs