myRT

myRT report for GCA_008565375.1_ASM856537v1

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Seq: VWMM01000012.1 Bacteroides salyersiae strain BIOML-A12 scaffold12_size178672, whole genome shotgun sequence (178672 bp)
Overview 1 RT 1: 52227-58877 bp Neighborhood of RT #1 [52227, 58877] Relaxase Relaxase RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 52227-53669 bp Feature: domain Description: Relaxase Location: 52551-52842 bp Feature: domain Description: Relaxase Location: 52551 -52842 bp Feature: domain Description: Relaxase Location: 53151-53403 bp Feature: domain Description: Relaxase Location: 531 51 -53403 bp Feature: gene Location: 54010-54786 bp Feature: gene Location: 55504-57156 bp Feature: domain Description: RVT_N Location: 55558-55801 bp Feature: domain Description: RVT_N Location: 55558-55801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55846-56494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55846-56494 bp Feature: domain Description: GIIM Note: maturase Location: 56548-56779 bp Feature: domain Description: GIIM Note: maturase Location: 56548-56779 bp Feature: gene Location: 57161-58366 bp Feature: domain Description: TraG-D_C Location: 57743-58076 bp Feature: domain Description: TraG-D_C Location: 57743-58076 bp Feature: gene Location: 58452-58877 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696)

Seq: VWMM01000014.1 Bacteroides salyersiae strain BIOML-A12 scaffold14_size148137, whole genome shotgun sequence (148137 bp)
Overview 1 RT 1: 49447-58018 bp Neighborhood of RT #1 [49447, 59799] RVT-DGRs CotH LRR_AMN1 Feature: gene Location: 49447-49737 bp Feature: gene Location: 49946-50428 bp Feature: gene Location: 50428-51729 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 50641-51238 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 50641-512 38 bp Feature: gene Location: 51964-52125 bp Feature: gene Location: 52234-59799 bp Feature: domain Description: CotH Location: 56071-56959 bp Feature: domain Description: CotH Location: 56071-56959 bp Feature: domain Description: LRR_AMN1 Location: 57592-58018 bp Feature: domain Description: LRR_AMN1 Location: 57592 -58018 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, CotH (pfam08757), LRR_AMN1 (sd00034)

Seq: VWMM01000019.1 Bacteroides salyersiae strain BIOML-A12 scaffold19_size111291, whole genome shotgun sequence (111291 bp)
Overview 1 RT 1: 87247-92195 bp Neighborhood of RT #1 [87247, 92218] RVT-CRISPR Cas1_I-II-III Cmr6_III-B Cas_Cmr5 Feature: gene Location: 87247-87510 bp Feature: gene Location: 87886-88050 bp Feature: gene Location: 88705-90978 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 88915-89518 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 88915-89518 bp Feature: domain Description: Cas1_I-II-III Location: 89980-90940 bp Feature: domain Description: Cas1_I-II-III Location: 89980-90940 bp Feature: gene Location: 91011-91799 bp Feature: domain Description: Cmr6_III-B Location: 91092-91788 bp Feature: domain Description: Cmr6_III-B Location: 91092-91788 bp Feature: gene Location: 91796-92218 bp Feature: domain Description: Cas_Cmr5 Location: 91868-92195 bp Feature: domain Description: Cas_Cmr5 Location: 91868-92195 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656), Cmr6_III-B (cd09661), Cas_Cmr5 (pfam09701)

Seq: VWMM01000001.1 Bacteroides salyersiae strain BIOML-A12 scaffold1_size355263, whole genome shotgun sequence (355263 bp)
Overview 1 RT 1: 177272-185256 bp Neighborhood of RT #1 [177272, 185256] RVT-DGRs Feature: gene Location: 177272-181798 bp Feature: gene Location: 181804-182118 bp Feature: gene Location: 182484-183530 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 182691-183318 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 182691-183318 bp Feature: gene Location: 183591-183785 bp Feature: gene Location: 183829-185256 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: VWMM01000002.1 Bacteroides salyersiae strain BIOML-A12 scaffold2_size352080, whole genome shotgun sequence (352080 bp)
Overview 1 RT 1: 158515-163369 bp Neighborhood of RT #1 [158515, 163369] RVT-UG27 Feature: gene Location: 158515-159609 bp Feature: gene Location: 159631-160092 bp Feature: gene Location: 161124-162389 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 161313-161949 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 161313-161949 bp Feature: gene Location: 162379-162780 bp Feature: gene Location: 162767-163369 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: VWMM01000007.1 Bacteroides salyersiae strain BIOML-A12 scaffold7_size239397, whole genome shotgun sequence (239397 bp)
Overview 1 RT 1: 94029-105413 bp Neighborhood of RT #1 [94029, 105413] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Laminin_G_3 CotH LRR_AMN1 Feature: gene Location: 94029-95174 bp Feature: domain Description: Arm-DNA-bind_5 Location: 94053-94299 bp Feature: domain Description: Arm-DNA-bind_5 Location: 94053-94299 bp Feature: domain Description: Phage_int_SAM_5 Location: 94338-94623 bp Feature: domain Description: Phage_int_SAM_5 Location: 94338-946 23 bp Feature: domain Description: INTN1_C_like Location: 94662-95136 bp Feature: domain Description: INTN1_C_like Location: 946 6 2-95136 bp Feature: gene Location: 95224-95718 bp Feature: gene Location: 95720-97075 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 95996-96587 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 95996 -96 587 bp Feature: gene Location: 97449-104237 bp Feature: domain Description: Laminin_G_3 Location: 99885-100266 bp Feature: domain Description: Laminin_G_3 Location: 99885-10026 6 bp Feature: domain Description: CotH Location: 100527-101469 bp Feature: domain Description: CotH Location: 100527-10146 9 bp Feature: domain Description: LRR_AMN1 Location: 101994-102441 bp Feature: domain Description: LRR_AMN1 Location: 101994-102441 bp Feature: gene Location: 104247-105413 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-DGRs, Laminin_G_3 (pfam13385), CotH (pfam08757), LRR_AMN1 (sd00034)