myRT

myRT report for GCA_008565415.1_ASM856541v1

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Seq: VWMJ01000003.1 Bacteroides salyersiae strain BIOML-A9 scaffold3_size349545, whole genome shotgun sequence (349545 bp)
Overview 1 RT 1: 176121-180371 bp Neighborhood of RT #1 [176121, 180371] RVT-DGRs Feature: gene Location: 176121-176435 bp Feature: gene Location: 176437-176826 bp Feature: gene Location: 176801-177847 bp Ori: KAA3740693.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 177008-177635 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 77008-1 77635 bp Feature: gene Location: 178146-179573 bp Feature: gene Location: 179610-180371 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: VWMJ01000007.1 Bacteroides salyersiae strain BIOML-A9 scaffold7_size231235, whole genome shotgun sequence (231235 bp)
Overview 1 RT 1: 95633-107017 bp Neighborhood of RT #1 [95633, 107017] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Laminin_G_3 CotH LRR_AMN1 Feature: gene Location: 95633-96778 bp Ori: KAA3738328.1 Feature: domain Description: Arm-DNA-bind_5 Location: 95657-95903 bp Feature: domain Description: Arm-DNA-bind_5 Location: 95657-95903 bp Feature: domain Description: Phage_int_SAM_5 Location: 95942-96227 bp Feature: domain Description: Phage_int_SAM_5 Location: 95942 -962 2 7 bp Feature: domain Description: INTN1_C_like Location: 96266-96740 bp Feature: domain Description: INTN1_C_like Location: 962 66-96740 bp Feature: gene Location: 96828-97322 bp Feature: gene Location: 97324-98619 bp Ori: KAA3738330.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 97540-98131 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 97540-98131 bp Feature: gene Location: 99053-105841 bp Ori: KAA3738331.1 Feature: domain Description: Laminin_G_3 Location: 101489-101870 bp Feature: domain Description: Laminin_G_3 Location: 101489-101870 bp Feature: domain Description: CotH Location: 102131-103073 bp Feature: domain Description: CotH Location: 102 131-103073 bp Feature: domain Description: LRR_AMN1 Location: 103598-104045 bp Feature: domain Description: LRR_AMN1 Location: 103598-104045 bp Feature: gene Location: 105851-107017 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-DGRs, Laminin_G_3 (pfam13385), CotH (pfam08757), LRR_AMN1 (sd00034)

Seq: VWMJ01000033.1 Bacteroides salyersiae strain BIOML-A9 scaffold33_size57167, whole genome shotgun sequence (57167 bp)
Overview 1 RT 1: 34369-37859 bp Neighborhood of RT #1 [34369, 37882] RVT-CRISPR Cas1_I-II-III Cmr6_III-B Cas_Cmr5 Feature: gene Location: 34369-36642 bp Ori: KAA3731640.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 34579-35182 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3 4579-3 5182 bp Feature: domain Description: Cas1_I-II-III Location: 35644-36604 bp Feature: domain Description: Cas1_I-II-III Location: 3 5644-3 6604 bp Feature: gene Location: 36675-37463 bp Ori: KAA3731641.1 Gene: cmr6 Feature: domain Description: Cmr6_III-B Location: 36756-37452 bp Feature: domain Description: Cmr6_III-B Location: 3 6756-3 7452 bp Feature: gene Location: 37460-37882 bp Ori: KAA3731642.1 Feature: domain Description: Cas_Cmr5 Location: 37532-37859 bp Feature: domain Description: Cas_Cmr5 Location: 3 753 2-3 7859 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656), Cmr6_III-B (cd09661), Cas_Cmr5 (pfam09701)

Seq: VWMJ01000002.1 Bacteroides salyersiae strain BIOML-A9 scaffold2_size415360, whole genome shotgun sequence (415360 bp)
Overview 1 RT 1: 128844-133698 bp Neighborhood of RT #1 [128844, 133698] RVT-UG27 Feature: gene Location: 128844-129446 bp Feature: gene Location: 129433-129834 bp Feature: gene Location: 129824-131089 bp Ori: KAA3741312.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 130013-130649 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 130013-13064 9 bp Feature: gene Location: 132121-132582 bp Feature: gene Location: 132604-133698 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: VWMJ01000005.1 Bacteroides salyersiae strain BIOML-A9 scaffold5_size263425, whole genome shotgun sequence (263425 bp)
Overview 1 RT 1: 161362-169933 bp Neighborhood of RT #1 [161362, 171714] RVT-DGRs CotH LRR_AMN1 Feature: gene Location: 161362-161652 bp Feature: gene Location: 161861-162343 bp Feature: gene Location: 162343-163644 bp Ori: KAA3739648.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 162556-163153 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1625 5 6-16315 3 bp Feature: gene Location: 163836-164024 bp Feature: gene Location: 164149-171714 bp Ori: KAA3739649.1 Feature: domain Description: CotH Location: 167986-168874 bp Feature: domain Description: CotH Location: 167986-168874 bp Feature: domain Description: LRR_AMN1 Location: 169507-169933 bp Feature: domain Description: LRR_AMN1 Location: 1695 07-169933 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, CotH (pfam08757), LRR_AMN1 (sd00034)

Seq: VWMJ01000011.1 Bacteroides salyersiae strain BIOML-A9 scaffold11_size178671, whole genome shotgun sequence (178671 bp)
Overview 1 RT 1: 52373-58876 bp Neighborhood of RT #1 [52373, 58876] Relaxase Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 52373-53668 bp Ori: KAA3736614.1 Feature: domain Description: Relaxase Location: 52550-52841 bp Feature: domain Description: Relaxase Location: 52550-52841 bp Feature: domain Description: Relaxase Location: 53150-53402 bp Feature: domain Description: Relaxase Location: 53150-53402 bp Feature: gene Location: 53943-54866 bp Ori: KAA3736615.1 Feature: domain Description: YWFCY Location: 53949-54126 bp Feature: domain Description: YWFCY Location: 53949-54126 bp Feature: gene Location: 55503-57155 bp Ori: KAA3736616.1 Gene: ltrA Feature: domain Description: RVT_N Location: 55557-55800 bp Feature: domain Description: RVT_N Location: 55557-55800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55845-56493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55845-56 493 bp Feature: domain Description: GIIM Note: maturase Location: 56547-56778 bp Feature: domain Description: GIIM Note: maturase Location: 56 547-56 778 bp Feature: gene Location: 57160-58365 bp Ori: KAA3736617.1 Feature: domain Description: TraG-D_C Location: 57742-58075 bp Feature: domain Description: TraG-D_C Location: 57742-58075 bp Feature: gene Location: 58481-58876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696)