myRT

myRT report for GCA_008565445.1_ASM856544v1

Download annotations/find similar RTs

Seq: VWMK01000004.1 Bacteroides salyersiae strain BIOML-A10 scaffold4_size296055, whole genome shotgun sequence (296055 bp)
Overview 1 RT 1: 281394-286248 bp Neighborhood of RT #1 [281394, 286248] RVT-UG27 Feature: gene Location: 281394-282488 bp Feature: gene Location: 282510-282971 bp Feature: gene Location: 284003-285268 bp Ori: KAA3767999.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 284192-284828 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 2841 92-284828 bp Feature: gene Location: 285258-285659 bp Feature: gene Location: 285646-286248 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: VWMK01000031.1 Bacteroides salyersiae strain BIOML-A10 scaffold31_size56894, whole genome shotgun sequence (56894 bp)
Overview 1 RT 1: 34308-37798 bp Neighborhood of RT #1 [34308, 37821] RVT-CRISPR Cas1_I-II-III Cmr6_III-B Cas_Cmr5 Feature: gene Location: 34308-36581 bp Ori: KAA3757763.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 34518-35121 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 34518-3512 1 bp Feature: domain Description: Cas1_I-II-III Location: 35583-36543 bp Feature: domain Description: Cas1_I-II-III Location: 35583-36543 bp Feature: gene Location: 36614-37402 bp Ori: KAA3757764.1 Gene: cmr6 Feature: domain Description: Cmr6_III-B Location: 36695-37391 bp Feature: domain Description: Cmr6_III-B Location: 36695-37391 bp Feature: gene Location: 37399-37821 bp Ori: KAA3757765.1 Feature: domain Description: Cas_Cmr5 Location: 37471-37798 bp Feature: domain Description: Cas_Cmr5 Location: 37471-37798 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656), Cmr6_III-B (cd09661), Cas_Cmr5 (pfam09701)

Seq: VWMK01000013.1 Bacteroides salyersiae strain BIOML-A10 scaffold13_size178618, whole genome shotgun sequence (178618 bp)
Overview 1 RT 1: 52320-58823 bp Neighborhood of RT #1 [52320, 58823] Relaxase Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 52320-53615 bp Ori: KAA3763503.1 Feature: domain Description: Relaxase Location: 52497-52788 bp Feature: domain Description: Relaxase Location: 52497-52788 bp Feature: domain Description: Relaxase Location: 53097-53349 bp Feature: domain Description: Relaxase Location: 53 097-53 3 49 bp Feature: gene Location: 53890-54813 bp Ori: KAA3763504.1 Feature: domain Description: YWFCY Location: 53896-54073 bp Feature: domain Description: YWFCY Location: 53 896-54073 bp Feature: gene Location: 55450-57102 bp Ori: KAA3763505.1 Gene: ltrA Feature: domain Description: RVT_N Location: 55504-55747 bp Feature: domain Description: RVT_N Location: 55504-55747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55792-56440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55792-56440 bp Feature: domain Description: GIIM Note: maturase Location: 56494-56725 bp Feature: domain Description: GIIM Note: maturase Location: 56494-56725 bp Feature: gene Location: 57107-58312 bp Ori: KAA3763506.1 Feature: domain Description: TraG-D_C Location: 57689-58022 bp Feature: domain Description: TraG-D_C Location: 57689-58022 bp Feature: gene Location: 58428-58823 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696)

Seq: VWMK01000009.1 Bacteroides salyersiae strain BIOML-A10 scaffold9_size197165, whole genome shotgun sequence (197165 bp)
Overview 1 RT 1: 25470-35822 bp Neighborhood of RT #1 [25470, 35822] CotH LRR_AMN1 RVT-DGRs Feature: gene Location: 25470-33035 bp Ori: KAA3765430.1 Feature: domain Description: CotH Location: 29307-30195 bp Feature: domain Description: CotH Location: 29307-30195 bp Feature: domain Description: LRR_AMN1 Location: 30828-31254 bp Feature: domain Description: LRR_AMN1 Location: 30828-31254 bp Feature: gene Location: 33160-33348 bp Feature: gene Location: 33540-34841 bp Ori: KAA3765431.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 33753-34350 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 33753-34 350 bp Feature: gene Location: 34841-35323 bp Feature: gene Location: 35532-35822 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CotH (pfam08757), LRR_AMN1 (sd00034), RVT-DGRs

Seq: VWMK01000002.1 Bacteroides salyersiae strain BIOML-A10 scaffold2_size349473, whole genome shotgun sequence (349473 bp)
Overview 1 RT 1: 176014-180264 bp Neighborhood of RT #1 [176014, 180264] RVT-DGRs Feature: gene Location: 176014-176328 bp Feature: gene Location: 176330-176719 bp Feature: gene Location: 176694-177740 bp Ori: KAA3769420.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 176901-177528 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 176901-1775 28 bp Feature: gene Location: 178039-179466 bp Feature: gene Location: 179503-180264 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: VWMK01000006.1 Bacteroides salyersiae strain BIOML-A10 scaffold6_size252343, whole genome shotgun sequence (252343 bp)
Overview 1 RT 1: 145400-156746 bp Neighborhood of RT #1 [145400, 156784] Laminin_G_3 CotH LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 145400-146566 bp Feature: gene Location: 146576-153364 bp Ori: KAA3766848.1 Feature: domain Description: Laminin_G_3 Location: 149012-149393 bp Feature: domain Description: Laminin_G_3 Location: 149012-149393 bp Feature: domain Description: CotH Location: 149654-150596 bp Feature: domain Description: CotH Location: 1496 54-150596 bp Feature: domain Description: LRR_AMN1 Location: 151121-151568 bp Feature: domain Description: LRR_AMN1 Location: 151121-15156 8 bp Feature: gene Location: 153798-155093 bp Ori: KAA3766849.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 154014-154605 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 154014-1546 05 bp Feature: gene Location: 155095-155589 bp Feature: gene Location: 155639-156784 bp Ori: KAA3766851.1 Feature: domain Description: Arm-DNA-bind_5 Location: 155663-155909 bp Feature: domain Description: Arm-DNA-bind_5 Location: 1556 6 3-155909 bp Feature: domain Description: Phage_int_SAM_5 Location: 155948-156233 bp Feature: domain Description: Phage_int_SAM_5 Location: 155948-156 233 bp Feature: domain Description: INTN1_C_like Location: 156272-156746 bp Feature: domain Description: INTN1_C_like Location: 156 272-156 746 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), CotH (pfam08757), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)