myRT

myRT report for GCA_008565495.1_ASM856549v1

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Seq: VWMG01000006.1 Bacteroides salyersiae strain BIOML-A6 scaffold6_size260034, whole genome shotgun sequence (260034 bp)
Overview 1 RT 1: 88339-98691 bp Neighborhood of RT #1 [88339, 98691] CotH LRR_AMN1 RVT-DGRs Feature: gene Location: 88339-95904 bp Ori: KAA3773630.1 Feature: domain Description: CotH Location: 92176-93064 bp Feature: domain Description: CotH Location: 921 76-93064 bp Feature: domain Description: LRR_AMN1 Location: 93697-94123 bp Feature: domain Description: LRR_AMN1 Location: 93697-941 23 bp Feature: gene Location: 96029-96217 bp Feature: gene Location: 96409-97710 bp Ori: KAA3773631.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 96622-97219 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 96622-9721 9 bp Feature: gene Location: 97710-98192 bp Feature: gene Location: 98401-98691 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CotH (pfam08757), LRR_AMN1 (sd00034), RVT-DGRs

Seq: VWMG01000003.1 Bacteroides salyersiae strain BIOML-A6 scaffold3_size355370, whole genome shotgun sequence (355370 bp)
Overview 1 RT 1: 181911-186161 bp Neighborhood of RT #1 [181911, 186161] RVT-DGRs Feature: gene Location: 181911-182225 bp Feature: gene Location: 182227-182616 bp Feature: gene Location: 182591-183637 bp Ori: KAA3775330.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 182798-183425 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 182 798-18342 5 bp Feature: gene Location: 183936-185363 bp Feature: gene Location: 185400-186161 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: VWMG01000007.1 Bacteroides salyersiae strain BIOML-A6 scaffold7_size252416, whole genome shotgun sequence (252416 bp)
Overview 1 RT 1: 145400-156746 bp Neighborhood of RT #1 [145400, 156784] Laminin_G_3 CotH LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 145400-146566 bp Feature: gene Location: 146576-153364 bp Ori: KAA3773210.1 Feature: domain Description: Laminin_G_3 Location: 149012-149393 bp Feature: domain Description: Laminin_G_3 Location: 149012-1493 93 bp Feature: domain Description: CotH Location: 149654-150596 bp Feature: domain Description: CotH Location: 149654-150596 bp Feature: domain Description: LRR_AMN1 Location: 151121-151568 bp Feature: domain Description: LRR_AMN1 Location: 151121-151568 bp Feature: gene Location: 153798-155093 bp Ori: KAA3773211.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 154014-154605 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 154014-154605 bp Feature: gene Location: 155095-155589 bp Feature: gene Location: 155639-156784 bp Ori: KAA3773213.1 Feature: domain Description: Arm-DNA-bind_5 Location: 155663-155909 bp Feature: domain Description: Arm-DNA-bind_5 Location: 155663 -155909 bp Feature: domain Description: Phage_int_SAM_5 Location: 155948-156233 bp Feature: domain Description: Phage_int_SAM_5 Location: 155948-15623 3 bp Feature: domain Description: INTN1_C_like Location: 156272-156746 bp Feature: domain Description: INTN1_C_like Location: 156272-156746 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), CotH (pfam08757), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: VWMG01000002.1 Bacteroides salyersiae strain BIOML-A6 scaffold2_size475228, whole genome shotgun sequence (475228 bp)
Overview 1 RT 1: 281663-286517 bp Neighborhood of RT #1 [281663, 286517] RVT-UG27 Feature: gene Location: 281663-282757 bp Feature: gene Location: 282779-283240 bp Feature: gene Location: 284272-285537 bp Ori: KAA3776279.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 284461-285097 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 284 4 61-285097 bp Feature: gene Location: 285527-285928 bp Feature: gene Location: 285915-286517 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: VWMG01000021.1 Bacteroides salyersiae strain BIOML-A6 scaffold21_size159878, whole genome shotgun sequence (159878 bp)
Overview 1 RT 1: 137292-140782 bp Neighborhood of RT #1 [137292, 140805] RVT-CRISPR Cas1_I-II-III Cmr6_III-B Cas_Cmr5 Feature: gene Location: 137292-139565 bp Ori: KAA3769672.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 137502-138105 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1375 02-138105 bp Feature: domain Description: Cas1_I-II-III Location: 138567-139527 bp Feature: domain Description: Cas1_I-II-III Location: 1385 67-1395 27 bp Feature: gene Location: 139598-140386 bp Ori: KAA3769673.1 Gene: cmr6 Feature: domain Description: Cmr6_III-B Location: 139679-140375 bp Feature: domain Description: Cmr6_III-B Location: 139679-140375 bp Feature: gene Location: 140383-140805 bp Ori: KAA3769674.1 Feature: domain Description: Cas_Cmr5 Location: 140455-140782 bp Feature: domain Description: Cas_Cmr5 Location: 14045 5 -140782 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656), Cmr6_III-B (cd09661), Cas_Cmr5 (pfam09701)

Seq: VWMG01000011.1 Bacteroides salyersiae strain BIOML-A6 scaffold11_size178672, whole genome shotgun sequence (178672 bp)
Overview 1 RT 1: 52374-58877 bp Neighborhood of RT #1 [52374, 58877] Relaxase Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 52374-53669 bp Ori: KAA3771657.1 Feature: domain Description: Relaxase Location: 52551-52842 bp Feature: domain Description: Relaxase Location: 52551-52842 bp Feature: domain Description: Relaxase Location: 53151-53403 bp Feature: domain Description: Relaxase Location: 53151-53403 bp Feature: gene Location: 53944-54867 bp Ori: KAA3771658.1 Feature: domain Description: YWFCY Location: 53950-54127 bp Feature: domain Description: YWFCY Location: 53950-54127 bp Feature: gene Location: 55504-57156 bp Ori: KAA3771659.1 Gene: ltrA Feature: domain Description: RVT_N Location: 55558-55801 bp Feature: domain Description: RVT_N Location: 55558-55801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55846-56494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55846 -56 494 bp Feature: domain Description: GIIM Note: maturase Location: 56548-56779 bp Feature: domain Description: GIIM Note: maturase Location: 56 548-56 779 bp Feature: gene Location: 57161-58366 bp Ori: KAA3771660.1 Feature: domain Description: TraG-D_C Location: 57743-58076 bp Feature: domain Description: TraG-D_C Location: 57743-58076 bp Feature: gene Location: 58482-58877 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696)