myRT

myRT report for GCA_008565555.1_ASM856555v1

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Seq: VWMC01000009.1 Bacteroides salyersiae strain BIOML-A2 scaffold9_size252484, whole genome shotgun sequence (252432 bp)
Overview 1 RT 1: 145402-156748 bp Neighborhood of RT #1 [145402, 156786] Laminin_G_3 CotH LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 145402-146568 bp Feature: gene Location: 146578-153366 bp Ori: KAA3791755.1 Feature: domain Description: Laminin_G_3 Location: 149014-149395 bp Feature: domain Description: Laminin_G_3 Location: 1 4901 4-1 49395 bp Feature: domain Description: CotH Location: 149656-150598 bp Feature: domain Description: CotH Location: 1 49656-1 50598 bp Feature: domain Description: LRR_AMN1 Location: 151123-151570 bp Feature: domain Description: LRR_AMN1 Location: 1 51 1 23-1 51 570 bp Feature: gene Location: 153800-155095 bp Ori: KAA3791756.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 154016-154607 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 5401 6-1 54607 bp Feature: gene Location: 155097-155591 bp Feature: gene Location: 155641-156786 bp Ori: KAA3791758.1 Feature: domain Description: Arm-DNA-bind_5 Location: 155665-155911 bp Feature: domain Description: Arm-DNA-bind_5 Location: 1 55665-1 5591 1 bp Feature: domain Description: Phage_int_SAM_5 Location: 155950-156235 bp Feature: domain Description: Phage_int_SAM_5 Location: 1 55950-1 56235 bp Feature: domain Description: INTN1_C_like Location: 156274-156748 bp Feature: domain Description: INTN1 _C_like Location: 1 56274-1 56748 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), CotH (pfam08757), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: VWMC01000002.1 Bacteroides salyersiae strain BIOML-A2 scaffold2_size396868, whole genome shotgun sequence (396868 bp)
Overview 1 RT 1: 203303-208157 bp Neighborhood of RT #1 [203303, 208157] RVT-UG27 Feature: gene Location: 203303-204397 bp Feature: gene Location: 204419-204880 bp Feature: gene Location: 205912-207177 bp Ori: KAA3794342.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 206101-206737 bp Feature: RT Description: RVT-UG2 7 Note: UG2 7 RT Location: 2 06101-2 06737 bp Feature: gene Location: 207167-207568 bp Feature: gene Location: 207555-208157 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: VWMC01000003.1 Bacteroides salyersiae strain BIOML-A2 scaffold3_size355228, whole genome shotgun sequence (355228 bp)
Overview 1 RT 1: 181804-186054 bp Neighborhood of RT #1 [181804, 186054] RVT-DGRs Feature: gene Location: 181804-182118 bp Feature: gene Location: 182120-182509 bp Feature: gene Location: 182484-183530 bp Ori: KAA3793863.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 182691-183318 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 182691-183 3 18 bp Feature: gene Location: 183829-185256 bp Feature: gene Location: 185293-186054 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: VWMC01000004.1 Bacteroides salyersiae strain BIOML-A2 scaffold4_size351316, whole genome shotgun sequence (351316 bp)
Overview 1 RT 1: 179621-189973 bp Neighborhood of RT #1 [179621, 189973] CotH LRR_AMN1 RVT-DGRs Feature: gene Location: 179621-187186 bp Ori: KAA3793447.1 Feature: domain Description: CotH Location: 183458-184346 bp Feature: domain Description: CotH Location: 1834 58-184 34 6 bp Feature: domain Description: LRR_AMN1 Location: 184979-185405 bp Feature: domain Description: LRR_AMN1 Location: 184 979-1854 05 bp Feature: gene Location: 187311-187499 bp Feature: gene Location: 187691-188992 bp Ori: KAA3793448.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 187904-188501 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 187904 -188501 bp Feature: gene Location: 188992-189474 bp Feature: gene Location: 189683-189973 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CotH (pfam08757), LRR_AMN1 (sd00034), RVT-DGRs

Seq: VWMC01000016.1 Bacteroides salyersiae strain BIOML-A2 scaffold16_size126324, whole genome shotgun sequence (126324 bp)
Overview 1 RT 1: 52376-58879 bp Neighborhood of RT #1 [52376, 58879] Relaxase Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 52376-53671 bp Ori: KAA3790131.1 Feature: domain Description: Relaxase Location: 52553-52844 bp Feature: domain Description: Relaxase Location: 5 25 5 3-5 2844 bp Feature: domain Description: Relaxase Location: 53153-53405 bp Feature: domain Description: Relaxase Location: 5 315 3-5 3405 bp Feature: gene Location: 53946-54869 bp Ori: KAA3790132.1 Feature: domain Description: YWFCY Location: 53952-54129 bp Feature: domain Description: YWFCY Location: 5 395 2-5 4129 bp Feature: gene Location: 55506-57158 bp Ori: KAA3790133.1 Gene: ltrA Feature: domain Description: RVT_N Location: 55560-55803 bp Feature: domain Description: RVT_N Location: 5 5 5 60-5 5 803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55848-56496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 5 848-5 6496 bp Feature: domain Description: GIIM Note: maturase Location: 56550-56781 bp Feature: domain Description: GIIM Note: maturase Location: 5 65 5 0-5 6781 bp Feature: gene Location: 57163-58368 bp Ori: KAA3790134.1 Feature: domain Description: TraG-D_C Location: 57745-58078 bp Feature: domain Description: TraG-D_C Location: 5 7745 -5 8078 bp Feature: gene Location: 58484-58879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696)

Seq: VWMC01000014.1 Bacteroides salyersiae strain BIOML-A2 scaffold14_size159693, whole genome shotgun sequence (159693 bp)
Overview 1 RT 1: 137107-140597 bp Neighborhood of RT #1 [137107, 140620] RVT-CRISPR Cas1_I-II-III Cmr6_III-B Cas_Cmr5 Feature: gene Location: 137107-139380 bp Ori: KAA3790588.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 137317-137920 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 137317-137920 bp Feature: domain Description: Cas1_I-II-III Location: 138382-139342 bp Feature: domain Description: Cas1_I-II-III Location: 138382-139342 bp Feature: gene Location: 139413-140201 bp Ori: KAA3790589.1 Gene: cmr6 Feature: domain Description: Cmr6_III-B Location: 139494-140190 bp Feature: domain Description: Cmr6 _III-B Location: 139494-140190 bp Feature: gene Location: 140198-140620 bp Ori: KAA3790590.1 Feature: domain Description: Cas_Cmr5 Location: 140270-140597 bp Feature: domain Description: Cas_Cmr5 Location: 140270-140597 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656), Cmr6_III-B (cd09661), Cas_Cmr5 (pfam09701)