myRT

myRT report for GCA_008571345.1_ASM857134v1

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Seq: VWAN01000011.1 Bacteroides finegoldii strain BIOML-A9 scaffold11_size104594, whole genome shotgun sequence (104594 bp)
Overview 1 RT 1: 86611-94506 bp Neighborhood of RT #1 [86611, 94547] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 Feature: gene Location: 86611-86925 bp Feature: domain Description: DUF3876 Location: 86665-86914 bp Feature: domain Description: DUF3876 Location: 86665-8691 4 bp Feature: gene Location: 86940-88634 bp Feature: domain Description: Bac_Flav_CT_G Location: 87060-88626 bp Feature: domain Description: Bac_Flav_CT_G Location: 87060-88626 bp Feature: gene Location: 88631-90292 bp Feature: RT Description: RVT_N Location: 88685-88928 bp Feature: RT Description: RVT_N Location: 88685-88928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88973-89621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88973-89621 bp Feature: domain Description: GIIM Note: maturase Location: 89675-89906 bp Feature: domain Description: GIIM Note: maturase Location: 89675-89906 bp Feature: gene Location: 90374-90754 bp Feature: gene Location: 90876-91706 bp Feature: domain Description: Bac_Flav_CT_G Location: 90996-91692 bp Feature: domain Description: Bac_Flav_CT_G Location: 90996-91 692 bp Feature: gene Location: 91687-93414 bp Feature: RT Description: RVT_N Location: 91792-92035 bp Feature: RT Description: RVT_N Location: 91 792-92035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92080-92728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92080-92728 bp Feature: domain Description: GIIM Note: maturase Location: 92779-93013 bp Feature: domain Description: GIIM Note: maturase Location: 92779-9301 3 bp Feature: gene Location: 93970-94215 bp Feature: domain Description: Bac_Flav_CT_G Location: 93973-94198 bp Feature: domain Description: Bac_Flav_CT_G Location: 93973-941 98 bp Feature: gene Location: 94212-94547 bp Feature: domain Description: DUF4133 Location: 94239-94506 bp Feature: domain Description: DUF41 33 Location: 94239-94506 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571)

Seq: VWAN01000014.1 Bacteroides finegoldii strain BIOML-A9 scaffold14_size98377, whole genome shotgun sequence (98377 bp)
Overview 1 RT 1: 17420-29226 bp Neighborhood of RT #1 [17420, 29226] rpsA DUF4011 DEXXQc_SF1 KOG1803 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 17420-19222 bp Feature: domain Description: rpsA Location: 17489-19106 bp Feature: domain Description: rpsA Location: 17489-19106 bp Feature: gene Location: 19319-25276 bp Feature: domain Description: DUF4011 Location: 20549-21062 bp Feature: domain Description: DUF4011 Location: 2 0549-2 1062 bp Feature: domain Description: DEXXQc_SF1 Location: 21401-23588 bp Feature: domain Description: DEXXQc_SF1 Location: 2 1401-2 3588 bp Feature: domain Description: KOG1803 Location: 23723-24104 bp Feature: domain Description: KOG1803 Location: 2 372 3-2 4104 bp Feature: domain Description: MTES_1575 Location: 24260-24545 bp Feature: domain Description: MTES_1575 Location: 2 42 60-2 4545 bp Feature: domain Description: DUF3320 Location: 24785-24926 bp Feature: domain Description: DUF332 0 Location: 2 4785-2 492 6 bp Feature: gene Location: 25278-26408 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 25599-26142 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 5599-2 6142 bp Feature: gene Location: 26614-28773 bp Feature: gene Location: 29056-29226 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase ), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons

Seq: VWAN01000021.1 Bacteroides finegoldii strain BIOML-A9 scaffold21_size72067, whole genome shotgun sequence (72067 bp)
Overview 1 RT 1: 62381-66451 bp Neighborhood of RT #1 [62381, 66528] RVT-DGRs TipAS COG2369 LPD3 Feature: gene Location: 62381-62623 bp Feature: gene Location: 62827-63312 bp Feature: gene Location: 63309-64610 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 63519-64197 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 63 519-64197 bp Feature: gene Location: 64986-65219 bp Feature: gene Location: 65317-66528 bp Feature: domain Description: TipAS Location: 65341-65644 bp Feature: domain Description: TipAS Location: 653 41-65644 bp Feature: domain Description: COG2369 Location: 65764-65950 bp Feature: domain Description: COG23 69 Location: 65764-65950 bp Feature: domain Description: LPD3 Location: 66169-66451 bp Feature: domain Description: LPD3 Location: 66169-66451 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, TipAS (pfam07739), COG2369 (Uncharacterized conserved protein, contains phage Mu gpF-like domain ), LPD3 (pfam18798)

Seq: VWAN01000030.1 Bacteroides finegoldii strain BIOML-A9 scaffold30_size51405, whole genome shotgun sequence (51405 bp)
Overview 1 RT 1: 46229-51218 bp Neighborhood of RT #1 [46229, 51292] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-GII Intron_maturas2 COG3943 Feature: gene Location: 46229-46696 bp Feature: gene Location: 47187-48356 bp Feature: domain Description: Arm-DNA-bind_5 Location: 47217-47472 bp Feature: domain Description: Arm-DNA-bind_5 Location: 4 7217-4 74 72 bp Feature: domain Description: Phage_int_SAM_5 Location: 47511-47832 bp Feature: domain Description: Phage_int_SAM_5 Location: 4 7511-4 7832 bp Feature: domain Description: INTN1_C_like Location: 47871-48339 bp Feature: domain Description: INTN1_C_like Location: 4 7871-4 8339 bp Feature: gene Location: 48907-50715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49171-49993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 9171-4 9993 bp Feature: domain Description: Intron_maturas2 Location: 50116-50371 bp Feature: domain Description: Intron_maturas2 Location: 50116-50371 bp Feature: gene Location: 50930-51292 bp Feature: domain Description: COG3943 Location: 50969-51218 bp Feature: domain Description: COG394 3 Location: 50969-51218 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-GII, Intron_maturas2 (pfam01348), COG3943 (Uncharacterized conserved protein )

Seq: VWAN01000034.1 Bacteroides finegoldii strain BIOML-A9 scaffold34_size62059, whole genome shotgun sequence (62059 bp)
Overview 1 RT 1: 492-9197 bp Neighborhood of RT #1 [492, 9197] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 492-6563 bp Feature: domain Description: Laminin_G_3 Location: 1182-1272 bp Feature: domain Description: Laminin_G_3 Location: 1182-1272 bp Feature: domain Description: Laminin_G_3 Location: 1920-2343 bp Feature: domain Description: Laminin_G_3 Location: 1920-2343 bp Feature: gene Location: 6716-6916 bp Feature: gene Location: 6988-8292 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7198-7876 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7198-7876 bp Feature: gene Location: 8289-8774 bp Feature: gene Location: 8955-9197 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: VWAN01000008.1 Bacteroides finegoldii strain BIOML-A9 scaffold8_size197049, whole genome shotgun sequence (196969 bp)
Overview 1 RT 1: 31067-36171 bp 2 RT 2: 42968-44798 bp Neighborhood of RT #1 [31067, 36171] Toprim_2 RVT-GII Intron_maturas2 Neighborhood of RT #2 [42968, 44798] RVT-Retrons Feature: gene Location: 31067-32470 bp Feature: gene Location: 32681-33610 bp Feature: domain Description: Toprim_2 Location: 33233-33521 bp Feature: domain Description: Toprim_2 Location: 33233-33521 bp Feature: gene Location: 33582-35390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33846-34668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33846 -346 6 8 bp Feature: domain Description: Intron_maturas2 Location: 34737-35046 bp Feature: domain Description: Intron_maturas2 Location: 34737-35046 bp Feature: gene Location: 35679-35822 bp Feature: gene Location: 35938-36171 bp Feature: gene Location: 42968-43108 bp Feature: gene Location: 43374-43520 bp Feature: gene Location: 43661-44296 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43817-44261 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43817-4426 1 bp Feature: gene Location: 44355-44522 bp Feature: gene Location: 44658-44798 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348), RVT-Retrons

Seq: VWAN01000093.1 Bacteroides finegoldii strain BIOML-A9 scaffold93_size4757, whole genome shotgun sequence (4671 bp)
Overview 1 RT 1: 312-4663 bp Neighborhood of RT #1 [312, 4668] TraO Bac_Flav_CT_N RVT-GII Intron_maturas2 Bac_Flav_CT_N Bac_Flav_CT_M Feature: gene Location: 312-887 bp Feature: domain Description: TraO Location: 387-882 bp Feature: domain Description: TraO Location: 387 -882 bp Feature: gene Location: 890-1597 bp Feature: domain Description: Bac_Flav_CT_N Location: 1013-1574 bp Feature: domain Description: Bac_Flav_CT_N Location: 1013-157 4 bp Feature: gene Location: 1587-3398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1851-2673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1851-267 3 bp Feature: domain Description: Intron_maturas2 Location: 2745-3051 bp Feature: domain Description: Intron_maturas2 Location: 27 45-3051 bp Feature: gene Location: 3939-4364 bp Feature: domain Description: Bac_Flav_CT_N Location: 3942-4344 bp Feature: domain Description: Bac_Flav_CT_N Location: 3942-4344 bp Feature: gene Location: 4399-4668 bp Feature: domain Description: Bac_Flav_CT_M Location: 4402-4663 bp Feature: domain Description: Bac_Flav_CT_M Location: 4402-4663 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), TraO (pfam10626), Bac_Flav_CT_M (TIGR03779), Bac_Flav_CT_N (TIGR03780)