myRT

myRT report for GCA_008571355.1_ASM857135v1

Download annotations/find similar RTs

Seq: VWAL01000010.1 Bacteroides finegoldii strain BIOML-A7 scaffold10_size116248, whole genome shotgun sequence (116248 bp)
Overview 1 RT 1: 84700-98713 bp Neighborhood of RT #1 [84700, 98829] GlnA3 RVT-Retrons DUF4011 DEXXQc_SF1 KOG1803 MTES_1575 DUF3320 rpsA Feature: gene Location: 84700-86889 bp Feature: domain Description: GlnA3 Location: 84772-86887 bp Feature: domain Description: GlnA3 Location: 84772-86887 bp Feature: gene Location: 87476-89635 bp Feature: gene Location: 89841-90971 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 90162-90705 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 901 62-90705 bp Feature: gene Location: 90973-96930 bp Feature: domain Description: DUF4011 Location: 92203-92716 bp Feature: domain Description: DUF401 1 Location: 92203-9271 6 bp Feature: domain Description: DEXXQc_SF1 Location: 93055-95242 bp Feature: domain Description: DEXXQc_SF1 Location: 93055-95242 bp Feature: domain Description: KOG1803 Location: 95377-95758 bp Feature: domain Description: KOG1 803 Location: 95377-95758 bp Feature: domain Description: MTES_1575 Location: 95914-96199 bp Feature: domain Description: MTES_1 575 Location: 9591 4-961 99 bp Feature: domain Description: DUF3320 Location: 96439-96580 bp Feature: domain Description: DUF3320 Location: 96439-96580 bp Feature: gene Location: 97027-98829 bp Feature: domain Description: rpsA Location: 97096-98713 bp Feature: domain Description: rpsA Location: 97096-9871 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase ), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: VWAL01000012.1 Bacteroides finegoldii strain BIOML-A7 scaffold12_size104594, whole genome shotgun sequence (104594 bp)
Overview 1 RT 1: 86611-94506 bp Neighborhood of RT #1 [86611, 94547] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 Feature: gene Location: 86611-86925 bp Feature: domain Description: DUF3876 Location: 86665-86914 bp Feature: domain Description: DUF3876 Location: 86665-86914 bp Feature: gene Location: 86940-88634 bp Feature: domain Description: Bac_Flav_CT_G Location: 87060-88626 bp Feature: domain Description: Bac_Flav_CT_G Location: 87060-8862 6 bp Feature: gene Location: 88631-90292 bp Feature: RT Description: RVT_N Location: 88685-88928 bp Feature: RT Description: RVT_N Location: 88685-8892 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88973-89621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88973-8962 1 bp Feature: domain Description: GIIM Note: maturase Location: 89675-89906 bp Feature: domain Description: GIIM Note: maturase Location: 89675-89906 bp Feature: gene Location: 90374-90754 bp Feature: gene Location: 90876-91706 bp Feature: domain Description: Bac_Flav_CT_G Location: 90996-91692 bp Feature: domain Description: Bac_Flav_CT_G Location: 90996-91692 bp Feature: gene Location: 91687-93414 bp Feature: RT Description: RVT_N Location: 91792-92035 bp Feature: RT Description: RVT_N Location: 91792 -92 035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92080-92728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92 080-92 72 8 bp Feature: domain Description: GIIM Note: maturase Location: 92779-93013 bp Feature: domain Description: GIIM Note: maturase Location: 92 779-93013 bp Feature: gene Location: 93970-94215 bp Feature: domain Description: Bac_Flav_CT_G Location: 93973-94198 bp Feature: domain Description: Bac_Flav_CT_G Location: 93973-94198 bp Feature: gene Location: 94212-94547 bp Feature: domain Description: DUF4133 Location: 94239-94506 bp Feature: domain Description: DUF4133 Location: 942 39-94506 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571)

Seq: VWAL01000003.1 Bacteroides finegoldii strain BIOML-A7 scaffold3_size248791, whole genome shotgun sequence (248791 bp)
Overview 1 RT 1: 62381-66451 bp Neighborhood of RT #1 [62381, 66528] RVT-DGRs TipAS COG2369 LPD3 Feature: gene Location: 62381-62623 bp Feature: gene Location: 62827-63312 bp Feature: gene Location: 63309-64610 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 63519-64197 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 63 519-64197 bp Feature: gene Location: 64986-65219 bp Feature: gene Location: 65317-66528 bp Feature: domain Description: TipAS Location: 65341-65644 bp Feature: domain Description: TipAS Location: 653 41-65644 bp Feature: domain Description: COG2369 Location: 65764-65950 bp Feature: domain Description: COG23 69 Location: 65764-65950 bp Feature: domain Description: LPD3 Location: 66169-66451 bp Feature: domain Description: LPD3 Location: 66169-66451 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, TipAS (pfam07739), COG2369 (Uncharacterized conserved protein, contains phage Mu gpF-like domain ), LPD3 (pfam18798)

Seq: VWAL01000007.1 Bacteroides finegoldii strain BIOML-A7 scaffold7_size297437, whole genome shotgun sequence (297437 bp)
Overview 1 RT 1: 190420-195777 bp Neighborhood of RT #1 [190420, 199898] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 190420-190662 bp Feature: gene Location: 190843-191328 bp Feature: gene Location: 191325-192629 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 191535-192213 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 191535-192213 bp Feature: gene Location: 192701-192949 bp Feature: gene Location: 193152-199898 bp Feature: domain Description: Laminin_G_3 Location: 194616-194706 bp Feature: domain Description: Laminin_G_3 Location: 194 616-194 706 bp Feature: domain Description: Laminin_G_3 Location: 195354-195777 bp Feature: domain Description: Laminin_G_3 Location: 195354 -195777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: VWAL01000082.1 Bacteroides finegoldii strain BIOML-A7 scaffold82_size4878, whole genome shotgun sequence (4878 bp)
Overview 1 RT 1: 1378-4876 bp Neighborhood of RT #1 [1378, 4876] HTH_17 COG3943 RVT-GII Intron_maturas2 Feature: gene Location: 1378-1683 bp Feature: domain Description: HTH_17 Location: 1516-1663 bp Feature: domain Description: HTH_17 Location: 15 16-1663 bp Feature: gene Location: 1758-2120 bp Feature: domain Description: COG3943 Location: 1797-2046 bp Feature: domain Description: COG3943 Location: 1797-2046 bp Feature: gene Location: 2335-4143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2599-3421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 99-3421 bp Feature: domain Description: Intron_maturas2 Location: 3544-3799 bp Feature: domain Description: Intron_maturas2 Location: 35 44-3799 bp Feature: gene Location: 4676-4876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), COG3943 (Uncharacterized conserved protein ), RVT-GII, Intron_maturas2 (pfam01348)

Seq: VWAL01000085.1 Bacteroides finegoldii strain BIOML-A7 scaffold85_size4659, whole genome shotgun sequence (4568 bp)
Overview 1 RT 1: 312-4344 bp Neighborhood of RT #1 [312, 4364] TraO Bac_Flav_CT_N RVT-GII Intron_maturas2 Bac_Flav_CT_N Feature: gene Location: 312-887 bp Feature: domain Description: TraO Location: 387-882 bp Feature: domain Description: TraO Location: 387-882 bp Feature: gene Location: 890-1597 bp Feature: domain Description: Bac_Flav_CT_N Location: 1013-1574 bp Feature: domain Description: Bac_Flav_CT_N Location: 1013-1574 bp Feature: gene Location: 1587-3398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1851-2673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1851-26 73 bp Feature: domain Description: Intron_maturas2 Location: 2745-3051 bp Feature: domain Description: Intron_maturas2 Location: 2745-3051 bp Feature: gene Location: 3433-3768 bp Feature: gene Location: 3939-4364 bp Feature: domain Description: Bac_Flav_CT_N Location: 3942-4344 bp Feature: domain Description: Bac_Flav_CT_N Location: 3942-4344 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), TraO (pfam10626), Bac_Flav_CT_N (TIGR03780)

Seq: VWAL01000008.1 Bacteroides finegoldii strain BIOML-A7 scaffold8_size150881, whole genome shotgun sequence (150881 bp)
Overview 1 RT 1: 30993-36097 bp 2 RT 2: 42894-44724 bp Neighborhood of RT #1 [30993, 36097] Toprim_2 RVT-GII Intron_maturas2 Neighborhood of RT #2 [42894, 44724] RVT-Retrons Feature: gene Location: 30993-32396 bp Feature: gene Location: 32607-33536 bp Feature: domain Description: Toprim_2 Location: 33159-33447 bp Feature: domain Description: Toprim_2 Location: 33159-33447 bp Feature: gene Location: 33508-35316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33772-34594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337 7 2-34594 bp Feature: domain Description: Intron_maturas2 Location: 34663-34972 bp Feature: domain Description: Intron_maturas2 Location: 34663-3497 2 bp Feature: gene Location: 35605-35748 bp Feature: gene Location: 35864-36097 bp Feature: gene Location: 42894-43034 bp Feature: gene Location: 43300-43446 bp Feature: gene Location: 43587-44222 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43743-44187 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 437 43-44187 bp Feature: gene Location: 44281-44448 bp Feature: gene Location: 44584-44724 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348), RVT-Retrons