myRT

myRT report for GCA_008571365.1_ASM857136v1

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Seq: VWAO01000010.1 Bacteroides finegoldii strain BIOML-A10 scaffold10_size116248, whole genome shotgun sequence (116248 bp)
Overview 1 RT 1: 84700-98713 bp Neighborhood of RT #1 [84700, 98829] GlnA3 RVT-Retrons DUF4011 DEXXQc_SF1 KOG1803 MTES_1575 DUF3320 rpsA Feature: gene Location: 84700-86889 bp Feature: domain Description: GlnA3 Location: 84772-86887 bp Feature: domain Description: GlnA3 Location: 84772-86887 bp Feature: gene Location: 87476-89635 bp Feature: gene Location: 89841-90971 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 90162-90705 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 901 62-90705 bp Feature: gene Location: 90973-96930 bp Feature: domain Description: DUF4011 Location: 92203-92716 bp Feature: domain Description: DUF401 1 Location: 92203-9271 6 bp Feature: domain Description: DEXXQc_SF1 Location: 93055-95242 bp Feature: domain Description: DEXXQc_SF1 Location: 93055-95242 bp Feature: domain Description: KOG1803 Location: 95377-95758 bp Feature: domain Description: KOG1 803 Location: 95377-95758 bp Feature: domain Description: MTES_1575 Location: 95914-96199 bp Feature: domain Description: MTES_1 575 Location: 9591 4-961 99 bp Feature: domain Description: DUF3320 Location: 96439-96580 bp Feature: domain Description: DUF3320 Location: 96439-96580 bp Feature: gene Location: 97027-98829 bp Feature: domain Description: rpsA Location: 97096-98713 bp Feature: domain Description: rpsA Location: 97096-9871 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase ), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: VWAO01000115.1 Bacteroides finegoldii strain BIOML-A10 scaffold115_size1098, whole genome shotgun sequence (1098 bp)
Overview 1 RT 1: 51-720 bp Neighborhood of RT #1 [51, 1097] RVT-GII GIIM Feature: gene Location: 51-1097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60-435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60-435 bp Feature: domain Description: GIIM Note: maturase Location: 489-720 bp Feature: domain Description: GIIM Note: maturase Location: 489-72 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VWAO01000012.1 Bacteroides finegoldii strain BIOML-A10 scaffold12_size104594, whole genome shotgun sequence (104594 bp)
Overview 1 RT 1: 86611-94506 bp Neighborhood of RT #1 [86611, 94547] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 Feature: gene Location: 86611-86925 bp Feature: domain Description: DUF3876 Location: 86665-86914 bp Feature: domain Description: DUF3 876 Location: 86665-86914 bp Feature: gene Location: 86940-88634 bp Feature: domain Description: Bac_Flav_CT_G Location: 87060-88626 bp Feature: domain Description: Bac_Flav_CT_G Location: 87060-88626 bp Feature: gene Location: 88631-90292 bp Feature: RT Description: RVT_N Location: 88685-88928 bp Feature: RT Description: RVT_N Location: 88685-88928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88973-89621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88973 -89621 bp Feature: domain Description: GIIM Note: maturase Location: 89675-89906 bp Feature: domain Description: GIIM Note: maturase Location: 89675-89906 bp Feature: gene Location: 90374-90754 bp Feature: gene Location: 90876-91706 bp Feature: domain Description: Bac_Flav_CT_G Location: 90996-91692 bp Feature: domain Description: Bac_Flav_CT_G Location: 90996-91692 bp Feature: gene Location: 91687-93414 bp Feature: RT Description: RVT_N Location: 91792-92035 bp Feature: RT Description: RVT_N Location: 91792-9203 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92080-92728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92080-92728 bp Feature: domain Description: GIIM Note: maturase Location: 92779-93013 bp Feature: domain Description: GIIM Note: maturase Location: 92779-93 013 bp Feature: gene Location: 93970-94215 bp Feature: domain Description: Bac_Flav_CT_G Location: 93973-94198 bp Feature: domain Description: Bac_Flav_CT_G Location: 93 973 -94198 bp Feature: gene Location: 94212-94547 bp Feature: domain Description: DUF4133 Location: 94239-94506 bp Feature: domain Description: DUF413 3 Location: 9423 9-94506 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571)

Seq: VWAO01000003.1 Bacteroides finegoldii strain BIOML-A10 scaffold3_size295914, whole genome shotgun sequence (295914 bp)
Overview 1 RT 1: 188897-194254 bp Neighborhood of RT #1 [188897, 198375] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 188897-189139 bp Feature: gene Location: 189320-189805 bp Feature: gene Location: 189802-191106 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 190012-190690 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 190012-190690 bp Feature: gene Location: 191178-191426 bp Feature: gene Location: 191629-198375 bp Feature: domain Description: Laminin_G_3 Location: 193093-193183 bp Feature: domain Description: Laminin_G_3 Location: 193093-193183 bp Feature: domain Description: Laminin_G_3 Location: 193831-194254 bp Feature: domain Description: Laminin_G_3 Location: 193831-194 254 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: VWAO01000045.1 Bacteroides finegoldii strain BIOML-A10 scaffold45_size30782, whole genome shotgun sequence (30782 bp)
Overview 1 RT 1: 28868-30698 bp Neighborhood of RT #1 [28868, 30698] RVT-Retrons Feature: gene Location: 28868-29008 bp Feature: gene Location: 29274-29420 bp Feature: gene Location: 29561-30196 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29717-30161 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29717-30161 bp Feature: gene Location: 30255-30422 bp Feature: gene Location: 30558-30698 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: VWAO01000058.1 Bacteroides finegoldii strain BIOML-A10 scaffold58_size19600, whole genome shotgun sequence (19600 bp)
Overview 1 RT 1: 1-1951 bp Neighborhood of RT #1 [1, 1951] RVT-DGRs Feature: gene Location: 1-1023 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4-610 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4-6 10 bp Feature: gene Location: 1020-1505 bp Feature: gene Location: 1709-1951 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: VWAO01000077.1 Bacteroides finegoldii strain BIOML-A10 scaffold77_size8222, whole genome shotgun sequence (8222 bp)
Overview 1 RT 1: 3896-8202 bp Neighborhood of RT #1 [3896, 8219] HTH_17 COG3943 RVT-GII Intron_maturas2 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 3896-4201 bp Feature: domain Description: HTH_17 Location: 4034-4181 bp Feature: domain Description: HTH_17 Location: 4034-4181 bp Feature: gene Location: 4276-4638 bp Feature: domain Description: COG3943 Location: 4315-4564 bp Feature: domain Description: COG3943 Location: 4315-4564 bp Feature: gene Location: 4853-6661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5117-5939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5117 -5939 bp Feature: domain Description: Intron_maturas2 Location: 6062-6317 bp Feature: domain Description: Intron_maturas2 Location: 6062-6317 bp Feature: gene Location: 7212-8219 bp Feature: domain Description: Phage_int_SAM_5 Location: 7374-7695 bp Feature: domain Description: Phage_int_SAM_5 Location: 7 37 4-7 695 bp Feature: domain Description: INTN1_C_like Location: 7734-8202 bp Feature: domain Description: INTN1_C_like Location: 7 7 34-8202 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), COG3943 (Uncharacterized conserved protein ), RVT-GII, Intron_maturas2 (pfam01348), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: VWAO01000095.1 Bacteroides finegoldii strain BIOML-A10 scaffold95_size5826, whole genome shotgun sequence (5826 bp)
Overview 1 RT 1: 2-4986 bp Neighborhood of RT #1 [2, 4991] Bac_Flav_CT_N RVT-GII Intron_maturas2 Bac_Flav_CT_N Bac_Flav_CT_M Feature: gene Location: 2-127 bp Feature: gene Location: 130-837 bp Feature: domain Description: Bac_Flav_CT_N Location: 253-814 bp Feature: domain Description: Bac_Flav_CT_N Location: 253-8 14 bp Feature: gene Location: 827-2638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1091-1913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1091-1913 bp Feature: domain Description: Intron_maturas2 Location: 1985-2291 bp Feature: domain Description: Intron_maturas2 Location: 198 5-2291 bp Feature: gene Location: 3179-3604 bp Feature: domain Description: Bac_Flav_CT_N Location: 3182-3584 bp Feature: domain Description: Bac_Flav_CT_N Location: 318 2-358 4 bp Feature: gene Location: 3639-4991 bp Feature: domain Description: Bac_Flav_CT_M Location: 3738-4986 bp Feature: domain Description: Bac_Flav_CT_M Location: 3738 -498 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_N (TIGR03780), Bac_Flav_CT_M (TIGR03779), RVT-GII, Intron_maturas2 (pfam01348)