myRT

myRT report for GCA_008571395.1_ASM857139v1

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Seq: VWAM01000011.1 Bacteroides finegoldii strain BIOML-A8 scaffold11_size116248, whole genome shotgun sequence (116248 bp)
Overview 1 RT 1: 84700-98713 bp Neighborhood of RT #1 [84700, 98829] GlnA3 RVT-Retrons DUF4011 DEXXQc_SF1 KOG1803 MTES_1575 DUF3320 rpsA Feature: gene Location: 84700-86889 bp Feature: domain Description: GlnA3 Location: 84772-86887 bp Feature: domain Description: GlnA3 Location: 84772-86887 bp Feature: gene Location: 87476-89635 bp Feature: gene Location: 89841-90971 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 90162-90705 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 901 62-90705 bp Feature: gene Location: 90973-96930 bp Feature: domain Description: DUF4011 Location: 92203-92716 bp Feature: domain Description: DUF401 1 Location: 92203-9271 6 bp Feature: domain Description: DEXXQc_SF1 Location: 93055-95242 bp Feature: domain Description: DEXXQc_SF1 Location: 93055-95242 bp Feature: domain Description: KOG1803 Location: 95377-95758 bp Feature: domain Description: KOG1 803 Location: 95377-95758 bp Feature: domain Description: MTES_1575 Location: 95914-96199 bp Feature: domain Description: MTES_1 575 Location: 9591 4-961 99 bp Feature: domain Description: DUF3320 Location: 96439-96580 bp Feature: domain Description: DUF3320 Location: 96439-96580 bp Feature: gene Location: 97027-98829 bp Feature: domain Description: rpsA Location: 97096-98713 bp Feature: domain Description: rpsA Location: 97096-9871 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase ), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: VWAM01000013.1 Bacteroides finegoldii strain BIOML-A8 scaffold13_size104594, whole genome shotgun sequence (104594 bp)
Overview 1 RT 1: 86611-94506 bp Neighborhood of RT #1 [86611, 94547] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 Feature: gene Location: 86611-86925 bp Feature: domain Description: DUF3876 Location: 86665-86914 bp Feature: domain Description: DUF3876 Location: 86665-86914 bp Feature: gene Location: 86940-88634 bp Feature: domain Description: Bac_Flav_CT_G Location: 87060-88626 bp Feature: domain Description: Bac_Flav_CT_G Location: 87060-8862 6 bp Feature: gene Location: 88631-90292 bp Feature: RT Description: RVT_N Location: 88685-88928 bp Feature: RT Description: RVT_N Location: 88685-8892 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88973-89621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88973-8962 1 bp Feature: domain Description: GIIM Note: maturase Location: 89675-89906 bp Feature: domain Description: GIIM Note: maturase Location: 89675-89906 bp Feature: gene Location: 90374-90754 bp Feature: gene Location: 90876-91706 bp Feature: domain Description: Bac_Flav_CT_G Location: 90996-91692 bp Feature: domain Description: Bac_Flav_CT_G Location: 90996-91692 bp Feature: gene Location: 91687-93414 bp Feature: RT Description: RVT_N Location: 91792-92035 bp Feature: RT Description: RVT_N Location: 91792 -92 035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92080-92728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92 080-92 72 8 bp Feature: domain Description: GIIM Note: maturase Location: 92779-93013 bp Feature: domain Description: GIIM Note: maturase Location: 92 779-93013 bp Feature: gene Location: 93970-94215 bp Feature: domain Description: Bac_Flav_CT_G Location: 93973-94198 bp Feature: domain Description: Bac_Flav_CT_G Location: 93973-94198 bp Feature: gene Location: 94212-94547 bp Feature: domain Description: DUF4133 Location: 94239-94506 bp Feature: domain Description: DUF4133 Location: 942 39-94506 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571)

Seq: VWAM01000003.1 Bacteroides finegoldii strain BIOML-A8 scaffold3_size332020, whole genome shotgun sequence (332640 bp)
Overview 1 RT 1: 146230-150300 bp Neighborhood of RT #1 [146230, 150377] RVT-DGRs TipAS COG2369 LPD3 Feature: gene Location: 146230-146472 bp Feature: gene Location: 146676-147161 bp Feature: gene Location: 147158-148459 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 147368-148046 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1473 68-148046 bp Feature: gene Location: 148835-149068 bp Feature: gene Location: 149166-150377 bp Feature: domain Description: TipAS Location: 149190-149493 bp Feature: domain Description: TipAS Location: 149190-149493 bp Feature: domain Description: COG2369 Location: 149613-149799 bp Feature: domain Description: COG23 69 Location: 149613 -149799 bp Feature: domain Description: LPD3 Location: 150018-150300 bp Feature: domain Description: LPD3 Location: 150018-1503 00 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, TipAS (pfam07739), COG2369 (Uncharacterized conserved protein, contains phage Mu gpF-like domain ), LPD3 (pfam18798)

Seq: VWAM01000006.1 Bacteroides finegoldii strain BIOML-A8 scaffold6_size158772, whole genome shotgun sequence (158772 bp)
Overview 1 RT 1: 51755-57112 bp Neighborhood of RT #1 [51755, 61233] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 51755-51997 bp Feature: gene Location: 52178-52663 bp Feature: gene Location: 52660-53964 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 52870-53548 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 52870-5354 8 bp Feature: gene Location: 54036-54284 bp Feature: gene Location: 54487-61233 bp Feature: domain Description: Laminin_G_3 Location: 55951-56041 bp Feature: domain Description: Laminin_G_3 Location: 55951-5604 1 bp Feature: domain Description: Laminin_G_3 Location: 56689-57112 bp Feature: domain Description: Laminin_G_3 Location: 56689-57112 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: VWAM01000007.1 Bacteroides finegoldii strain BIOML-A8 scaffold7_size150882, whole genome shotgun sequence (150882 bp)
Overview 1 RT 1: 30994-36098 bp 2 RT 2: 42895-44725 bp Neighborhood of RT #1 [30994, 36098] Toprim_2 RVT-GII Intron_maturas2 Neighborhood of RT #2 [42895, 44725] RVT-Retrons Feature: gene Location: 30994-32397 bp Feature: gene Location: 32608-33537 bp Feature: domain Description: Toprim_2 Location: 33160-33448 bp Feature: domain Description: Toprim_2 Location: 33160-33448 bp Feature: gene Location: 33509-35317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33773-34595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33773-345 95 bp Feature: domain Description: Intron_maturas2 Location: 34664-34973 bp Feature: domain Description: Intron_maturas2 Location: 34664-34973 bp Feature: gene Location: 35606-35749 bp Feature: gene Location: 35865-36098 bp Feature: gene Location: 42895-43035 bp Feature: gene Location: 43301-43447 bp Feature: gene Location: 43588-44223 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43744-44188 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43744-44188 bp Feature: gene Location: 44282-44449 bp Feature: gene Location: 44585-44725 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348), RVT-Retrons

Seq: VWAM01000081.1 Bacteroides finegoldii strain BIOML-A8 scaffold81_size5534, whole genome shotgun sequence (5534 bp)
Overview 1 RT 1: 1208-5514 bp Neighborhood of RT #1 [1208, 5531] HTH_17 COG3943 RVT-GII Intron_maturas2 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 1208-1513 bp Feature: domain Description: HTH_17 Location: 1346-1493 bp Feature: domain Description: HTH_17 Location: 1346 -1493 bp Feature: gene Location: 1588-1950 bp Feature: domain Description: COG3943 Location: 1627-1876 bp Feature: domain Description: COG3943 Location: 16 27-1876 bp Feature: gene Location: 2165-3973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2429-3251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2429-3251 bp Feature: domain Description: Intron_maturas2 Location: 3374-3629 bp Feature: domain Description: Intron_maturas2 Location: 3374-36 29 bp Feature: gene Location: 4524-5531 bp Feature: domain Description: Phage_int_SAM_5 Location: 4686-5007 bp Feature: domain Description: Phage_int_SAM_5 Location: 46 86 -5007 bp Feature: domain Description: INTN1_C_like Location: 5046-5514 bp Feature: domain Description: INTN1_C_like Location: 5046 -5514 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), COG3943 (Uncharacterized conserved protein ), RVT-GII, Intron_maturas2 (pfam01348), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: VWAM01000086.1 Bacteroides finegoldii strain BIOML-A8 scaffold86_size5033, whole genome shotgun sequence (4947 bp)
Overview 1 RT 1: 939-4926 bp Neighborhood of RT #1 [939, 4946] TraO Bac_Flav_CT_N RVT-GII Intron_maturas2 Bac_Flav_CT_N Feature: gene Location: 939-1514 bp Feature: domain Description: TraO Location: 1014-1509 bp Feature: domain Description: TraO Location: 1014-1509 bp Feature: gene Location: 1517-2224 bp Feature: domain Description: Bac_Flav_CT_N Location: 1640-2201 bp Feature: domain Description: Bac_Flav_CT_N Location: 1640-2201 bp Feature: gene Location: 2214-4025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2478-3300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 247 8-3300 bp Feature: domain Description: Intron_maturas2 Location: 3372-3678 bp Feature: domain Description: Intron_maturas2 Location: 337 2-367 8 bp Feature: gene Location: 4566-4946 bp Feature: domain Description: Bac_Flav_CT_N Location: 4662-4926 bp Feature: domain Description: Bac_Flav_CT_N Location: 4662-4926 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_N (TIGR03780), RVT-GII, Intron_maturas2 (pfam01348), TraO (pfam10626)