myRT

myRT report for GCA_008571435.1_ASM857143v1

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Seq: VWAK01000013.1 Bacteroides finegoldii strain BIOML-A6 scaffold13_size104594, whole genome shotgun sequence (104594 bp)
Overview 1 RT 1: 86611-94506 bp Neighborhood of RT #1 [86611, 94547] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 Feature: gene Location: 86611-86925 bp Feature: domain Description: DUF3876 Location: 86665-86914 bp Feature: domain Description: DUF3876 Location: 86665-8691 4 bp Feature: gene Location: 86940-88634 bp Feature: domain Description: Bac_Flav_CT_G Location: 87060-88626 bp Feature: domain Description: Bac_Flav_CT_G Location: 87060-88626 bp Feature: gene Location: 88631-90292 bp Feature: RT Description: RVT_N Location: 88685-88928 bp Feature: RT Description: RVT_N Location: 88685-88928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88973-89621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88973-89621 bp Feature: domain Description: GIIM Note: maturase Location: 89675-89906 bp Feature: domain Description: GIIM Note: maturase Location: 89675-89906 bp Feature: gene Location: 90374-90754 bp Feature: gene Location: 90876-91706 bp Feature: domain Description: Bac_Flav_CT_G Location: 90996-91692 bp Feature: domain Description: Bac_Flav_CT_G Location: 90996-91 692 bp Feature: gene Location: 91687-93414 bp Feature: RT Description: RVT_N Location: 91792-92035 bp Feature: RT Description: RVT_N Location: 91 792-92035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92080-92728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92080-92728 bp Feature: domain Description: GIIM Note: maturase Location: 92779-93013 bp Feature: domain Description: GIIM Note: maturase Location: 92779-9301 3 bp Feature: gene Location: 93970-94215 bp Feature: domain Description: Bac_Flav_CT_G Location: 93973-94198 bp Feature: domain Description: Bac_Flav_CT_G Location: 93973-941 98 bp Feature: gene Location: 94212-94547 bp Feature: domain Description: DUF4133 Location: 94239-94506 bp Feature: domain Description: DUF41 33 Location: 94239-94506 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571)

Seq: VWAK01000002.1 Bacteroides finegoldii strain BIOML-A6 scaffold2_size295767, whole genome shotgun sequence (295767 bp)
Overview 1 RT 1: 188750-194107 bp Neighborhood of RT #1 [188750, 198228] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 188750-188992 bp Feature: gene Location: 189173-189658 bp Feature: gene Location: 189655-190959 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 189865-190543 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 189865-190543 bp Feature: gene Location: 191031-191279 bp Feature: gene Location: 191482-198228 bp Feature: domain Description: Laminin_G_3 Location: 192946-193036 bp Feature: domain Description: Laminin_G_3 Location: 192 946-193036 bp Feature: domain Description: Laminin_G_3 Location: 193684-194107 bp Feature: domain Description: Laminin_G_3 Location: 193684-194107 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: VWAK01000036.1 Bacteroides finegoldii strain BIOML-A6 scaffold36_size46953, whole genome shotgun sequence (46953 bp)
Overview 1 RT 1: 25317-29464 bp Neighborhood of RT #1 [25317, 29464] TipAS COG2369 LPD3 RVT-DGRs Feature: gene Location: 25317-26528 bp Feature: domain Description: TipAS Location: 25341-25644 bp Feature: domain Description: TipAS Location: 253 41-25644 bp Feature: domain Description: COG2369 Location: 25764-25950 bp Feature: domain Description: COG23 69 Location: 25764-25950 bp Feature: domain Description: LPD3 Location: 26169-26451 bp Feature: domain Description: LPD3 Location: 26169-26451 bp Feature: gene Location: 26626-26859 bp Feature: gene Location: 27235-28536 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 27445-28123 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 27445-28123 bp Feature: gene Location: 28533-29018 bp Feature: gene Location: 29222-29464 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TipAS (pfam07739), COG2369 (Uncharacterized conserved protein, contains phage Mu gpF-like domain ), LPD3 (pfam18798), RVT-DGRs

Seq: VWAK01000048.1 Bacteroides finegoldii strain BIOML-A6 scaffold48_size31860, whole genome shotgun sequence (31860 bp)
Overview 1 RT 1: 28868-30698 bp Neighborhood of RT #1 [28868, 30698] RVT-Retrons Feature: gene Location: 28868-29008 bp Feature: gene Location: 29274-29420 bp Feature: gene Location: 29561-30196 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29717-30161 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29717-30161 bp Feature: gene Location: 30255-30422 bp Feature: gene Location: 30558-30698 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: VWAK01000088.1 Bacteroides finegoldii strain BIOML-A6 scaffold88_size4582, whole genome shotgun sequence (4582 bp)
Overview 1 RT 1: 1082-4580 bp Neighborhood of RT #1 [1082, 4580] HTH_17 COG3943 RVT-GII Intron_maturas2 Feature: gene Location: 1082-1387 bp Feature: domain Description: HTH_17 Location: 1220-1367 bp Feature: domain Description: HTH_17 Location: 1220-1367 bp Feature: gene Location: 1462-1824 bp Feature: domain Description: COG3943 Location: 1501-1750 bp Feature: domain Description: COG3943 Location: 15 01-175 0 bp Feature: gene Location: 2039-3847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2303-3125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2303-3125 bp Feature: domain Description: Intron_maturas2 Location: 3248-3503 bp Feature: domain Description: Intron_maturas2 Location: 3248-35 03 bp Feature: gene Location: 4380-4580 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), COG3943 (Uncharacterized conserved protein ), RVT-GII, Intron_maturas2 (pfam01348)

Seq: VWAK01000008.1 Bacteroides finegoldii strain BIOML-A6 scaffold8_size116248, whole genome shotgun sequence (116248 bp)
Overview 1 RT 1: 84700-98713 bp Neighborhood of RT #1 [84700, 98829] GlnA3 RVT-Retrons DUF4011 DEXXQc_SF1 KOG1803 MTES_1575 DUF3320 rpsA Feature: gene Location: 84700-86889 bp Feature: domain Description: GlnA3 Location: 84772-86887 bp Feature: domain Description: GlnA3 Location: 84772-86 887 bp Feature: gene Location: 87476-89635 bp Feature: gene Location: 89841-90971 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 90162-90705 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9016 2-90705 bp Feature: gene Location: 90973-96930 bp Feature: domain Description: DUF4011 Location: 92203-92716 bp Feature: domain Description: DUF4011 Location: 92203-92716 bp Feature: domain Description: DEXXQc_SF1 Location: 93055-95242 bp Feature: domain Description: DEXXQc_SF1 Location: 93055-95242 bp Feature: domain Description: KOG1803 Location: 95377-95758 bp Feature: domain Description: KOG1803 Location: 95377-95758 bp Feature: domain Description: MTES_1575 Location: 95914-96199 bp Feature: domain Description: MTES_1575 Location: 95914-96 199 bp Feature: domain Description: DUF3320 Location: 96439-96580 bp Feature: domain Description: DUF3320 Location: 96 439-96 580 bp Feature: gene Location: 97027-98829 bp Feature: domain Description: rpsA Location: 97096-98713 bp Feature: domain Description: rpsA Location: 97096 -98713 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase ), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: VWAK01000097.1 Bacteroides finegoldii strain BIOML-A6 scaffold97_size4618, whole genome shotgun sequence (4618 bp)
Overview 1 RT 1: 1694-4124 bp Neighborhood of RT #1 [1694, 4471] Bac_Flav_CT_N RVT-GII Intron_maturas2 Feature: gene Location: 1694-2119 bp Feature: domain Description: Bac_Flav_CT_N Location: 1697-2099 bp Feature: domain Description: Bac_Flav_CT_N Location: 1697 -2099 bp Feature: gene Location: 2290-2625 bp Feature: gene Location: 2660-4471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2924-3746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2924-37 46 bp Feature: domain Description: Intron_maturas2 Location: 3818-4124 bp Feature: domain Description: Intron_maturas2 Location: 3818-4124 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_N (TIGR03780), RVT-GII, Intron_maturas2 (pfam01348)