myRT

myRT report for GCA_008571445.1_ASM857144v1

Download annotations/find similar RTs

Seq: VWAI01000101.1 Bacteroides finegoldii strain BIOML-A4 scaffold101_size3001, whole genome shotgun sequence (3001 bp)
Overview 1 RT 1: 3-2999 bp Neighborhood of RT #1 [3, 2999] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 3-140 bp Feature: gene Location: 286-447 bp Feature: gene Location: 767-2602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1061-1883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 061 -1 883 bp Feature: domain Description: Intron_maturas2 Location: 2042-2411 bp Feature: domain Description: Intron_maturas2 Location: 2042-241 1 bp Feature: domain Description: HNHc Note: nucleases Location: 2435-2576 bp Feature: domain Description: HNHc Note: nucleases Location: 2435-2576 bp Feature: gene Location: 2595-2999 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VWAI01000108.1 Bacteroides finegoldii strain BIOML-A4 scaffold108_size2557, whole genome shotgun sequence (2557 bp)
Overview 1 RT 1: 3-2317 bp Neighborhood of RT #1 [3, 2317] RVT_N RVT-GII GIIM Feature: gene Location: 3-194 bp Feature: gene Location: 199-1851 bp Feature: RT Description: RVT_N Location: 253-496 bp Feature: RT Description: RVT_N Location: 2 53-496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 541-1189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 541-1189 bp Feature: domain Description: GIIM Note: maturase Location: 1243-1474 bp Feature: domain Description: GIIM Note: maturase Location: 12 43-1474 bp Feature: gene Location: 2168-2317 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: VWAI01000111.1 Bacteroides finegoldii strain BIOML-A4 scaffold111_size2372, whole genome shotgun sequence (2372 bp)
Overview 1 RT 1: 2-2309 bp Neighborhood of RT #1 [2, 2332] OMP_RagA_SusC RVT-GII Intron_maturas2 HNHc Feature: gene Location: 2-190 bp Feature: gene Location: 212-493 bp Feature: domain Description: OMP_RagA_SusC Location: 275-485 bp Feature: domain Description: OMP_RagA_SusC Location: 275-485 bp Feature: gene Location: 527-2332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 791-1613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 791-1613 bp Feature: domain Description: Intron_maturas2 Location: 1691-2021 bp Feature: domain Description: Intron_maturas2 Location: 1691-2021 bp Feature: domain Description: HNHc Note: nucleases Location: 2165-2309 bp Feature: domain Description: HNHc Note: nucleases Location: 2165-23 09 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OMP_RagA_SusC (TIGR04056), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VWAI01000011.1 Bacteroides finegoldii strain BIOML-A4 scaffold11_size116248, whole genome shotgun sequence (116248 bp)
Overview 1 RT 1: 84700-98713 bp Neighborhood of RT #1 [84700, 98829] GlnA3 RVT-Retrons DUF4011 DEXXQc_SF1 KOG1803 MTES_1575 DUF3320 rpsA Feature: gene Location: 84700-86889 bp Feature: domain Description: GlnA3 Location: 84772-86887 bp Feature: domain Description: GlnA3 Location: 84 772-86887 bp Feature: gene Location: 87476-89635 bp Feature: gene Location: 89841-90971 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 90162-90705 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 90162-90705 bp Feature: gene Location: 90973-96930 bp Feature: domain Description: DUF4011 Location: 92203-92716 bp Feature: domain Description: DUF4 011 Location: 92203-92716 bp Feature: domain Description: DEXXQc_SF1 Location: 93055-95242 bp Feature: domain Description: DEXXQc_SF1 Location: 93055-9524 2 bp Feature: domain Description: KOG1803 Location: 95377-95758 bp Feature: domain Description: KOG1803 Location: 95377-95758 bp Feature: domain Description: MTES_1575 Location: 95914-96199 bp Feature: domain Description: MTES_1575 Location: 95914 -96199 bp Feature: domain Description: DUF3320 Location: 96439-96580 bp Feature: domain Description: DUF3320 Location: 964 39-96580 bp Feature: gene Location: 97027-98829 bp Feature: domain Description: rpsA Location: 97096-98713 bp Feature: domain Description: rpsA Location: 97096-98713 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase ), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: VWAI01000128.1 Bacteroides finegoldii strain BIOML-A4 scaffold128_size1641, whole genome shotgun sequence (1641 bp)
Overview 1 RT 1: 1-1639 bp Neighborhood of RT #1 [1, 1639] RVT-GII GIIM Feature: gene Location: 1-1446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121-769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121-769 bp Feature: domain Description: GIIM Note: maturase Location: 823-1054 bp Feature: domain Description: GIIM Note: maturase Location: 823-105 4 bp Feature: gene Location: 1400-1639 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VWAI01000013.1 Bacteroides finegoldii strain BIOML-A4 scaffold13_size104594, whole genome shotgun sequence (104594 bp)
Overview 1 RT 1: 86611-94506 bp Neighborhood of RT #1 [86611, 94547] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 Feature: gene Location: 86611-86925 bp Feature: domain Description: DUF3876 Location: 86665-86914 bp Feature: domain Description: DUF3876 Location: 86 6 6 5-86 914 bp Feature: gene Location: 86940-88634 bp Feature: domain Description: Bac_Flav_CT_G Location: 87060-88626 bp Feature: domain Description: Bac_Flav_CT_G Location: 8706 0-886 26 bp Feature: gene Location: 88631-90292 bp Feature: RT Description: RVT_N Location: 88685-88928 bp Feature: RT Description: RVT_N Location: 886 85-88928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88973-89621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88973-896 21 bp Feature: domain Description: GIIM Note: maturase Location: 89675-89906 bp Feature: domain Description: GIIM Note: maturase Location: 896 75-89906 bp Feature: gene Location: 90374-90754 bp Feature: gene Location: 90876-91706 bp Feature: domain Description: Bac_Flav_CT_G Location: 90996-91692 bp Feature: domain Description: Bac_Flav_CT_G Location: 90996 -916 92 bp Feature: gene Location: 91687-93414 bp Feature: RT Description: RVT_N Location: 91792-92035 bp Feature: RT Description: RVT_N Location: 91792-92035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92080-92728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92080-92728 bp Feature: domain Description: GIIM Note: maturase Location: 92779-93013 bp Feature: domain Description: GIIM Note: maturase Location: 92779-93013 bp Feature: gene Location: 93970-94215 bp Feature: domain Description: Bac_Flav_CT_G Location: 93973-94198 bp Feature: domain Description: Bac_Flav_CT_G Location: 93973-94198 bp Feature: gene Location: 94212-94547 bp Feature: domain Description: DUF4133 Location: 94239-94506 bp Feature: domain Description: DUF4133 Location: 94239-94506 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571)

Seq: VWAI01000142.1 Bacteroides finegoldii strain BIOML-A4 scaffold142_size1371, whole genome shotgun sequence (1371 bp)
Overview 1 RT 1: 1-1361 bp Neighborhood of RT #1 [1, 1369] Avd_like RVT-DGRs Feature: gene Location: 1-285 bp Feature: domain Description: Avd_like Location: 4-277 bp Feature: domain Description: Avd_like Location: 4-27 7 bp Feature: gene Location: 359-1369 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 731-1361 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7 31-1361 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs

Seq: VWAI01000003.1 Bacteroides finegoldii strain BIOML-A4 scaffold3_size248791, whole genome shotgun sequence (248791 bp)
Overview 1 RT 1: 62381-66451 bp Neighborhood of RT #1 [62381, 66528] RVT-DGRs TipAS COG2369 LPD3 Feature: gene Location: 62381-62623 bp Feature: gene Location: 62827-63312 bp Feature: gene Location: 63309-64610 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 63519-64197 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 63519-64197 bp Feature: gene Location: 64986-65219 bp Feature: gene Location: 65317-66528 bp Feature: domain Description: TipAS Location: 65341-65644 bp Feature: domain Description: TipAS Location: 65341-65644 bp Feature: domain Description: COG2369 Location: 65764-65950 bp Feature: domain Description: COG2369 Location: 65764-65950 bp Feature: domain Description: LPD3 Location: 66169-66451 bp Feature: domain Description: LPD3 Location: 66169-66451 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, TipAS (pfam07739), COG2369 (Uncharacterized conserved protein, contains phage Mu gpF-like domain ), LPD3 (pfam18798)

Seq: VWAI01000007.1 Bacteroides finegoldii strain BIOML-A4 scaffold7_size158772, whole genome shotgun sequence (158772 bp)
Overview 1 RT 1: 97540-107018 bp Neighborhood of RT #1 [97540, 107018] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 97540-104286 bp Feature: domain Description: Laminin_G_3 Location: 99004-99094 bp Feature: domain Description: Laminin_G_3 Location: 9 9 004-9 9 09 4 bp Feature: domain Description: Laminin_G_3 Location: 99742-100165 bp Feature: domain Description: Laminin_G_3 Location: 9 9 742-100165 bp Feature: gene Location: 104537-104737 bp Feature: gene Location: 104809-106113 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 105019-105697 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 105019 -10569 7 bp Feature: gene Location: 106110-106595 bp Feature: gene Location: 106776-107018 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: VWAI01000008.1 Bacteroides finegoldii strain BIOML-A4 scaffold8_size150955, whole genome shotgun sequence (150955 bp)
Overview 1 RT 1: 31067-36171 bp 2 RT 2: 42968-44798 bp Neighborhood of RT #1 [31067, 36171] Toprim_2 RVT-GII Intron_maturas2 Neighborhood of RT #2 [42968, 44798] RVT-Retrons Feature: gene Location: 31067-32470 bp Feature: gene Location: 32681-33610 bp Feature: domain Description: Toprim_2 Location: 33233-33521 bp Feature: domain Description: Toprim_2 Location: 33233-33521 bp Feature: gene Location: 33582-35390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33846-34668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33846-34668 bp Feature: domain Description: Intron_maturas2 Location: 34737-35046 bp Feature: domain Description: Intron_maturas2 Location: 34737-35046 bp Feature: gene Location: 35679-35822 bp Feature: gene Location: 35938-36171 bp Feature: gene Location: 42968-43108 bp Feature: gene Location: 43374-43520 bp Feature: gene Location: 43661-44296 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43817-44261 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43817-44261 bp Feature: gene Location: 44355-44522 bp Feature: gene Location: 44658-44798 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348), RVT-Retrons

Seq: VWAI01000090.1 Bacteroides finegoldii strain BIOML-A4 scaffold90_size4054, whole genome shotgun sequence (4054 bp)
Overview 1 RT 1: 3-3915 bp Neighborhood of RT #1 [3, 3935] TraO Bac_Flav_CT_N RVT-GII Intron_maturas2 Bac_Flav_CT_N Feature: gene Location: 3-458 bp Feature: domain Description: TraO Location: 78-459 bp Feature: domain Description: TraO Location: 78-459 bp Feature: gene Location: 461-1168 bp Feature: domain Description: Bac_Flav_CT_N Location: 584-1145 bp Feature: domain Description: Bac_Flav_CT_N Location: 584-11 45 bp Feature: gene Location: 1158-2969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1422-2244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1422-2244 bp Feature: domain Description: Intron_maturas2 Location: 2316-2622 bp Feature: domain Description: Intron_maturas2 Location: 2316-2622 bp Feature: gene Location: 3004-3339 bp Feature: gene Location: 3510-3935 bp Feature: domain Description: Bac_Flav_CT_N Location: 3513-3915 bp Feature: domain Description: Bac_Flav_CT_N Location: 3513-3915 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), TraO (pfam10626), Bac_Flav_CT_N (TIGR03780)

Seq: VWAI01000091.1 Bacteroides finegoldii strain BIOML-A4 scaffold91_size3739, whole genome shotgun sequence (3739 bp)
Overview 1 RT 1: 239-3737 bp Neighborhood of RT #1 [239, 3737] HTH_17 COG3943 RVT-GII Intron_maturas2 Feature: gene Location: 239-544 bp Feature: domain Description: HTH_17 Location: 377-524 bp Feature: domain Description: HTH_17 Location: 377-524 bp Feature: gene Location: 619-981 bp Feature: domain Description: COG3943 Location: 658-907 bp Feature: domain Description: COG3943 Location: 658-907 bp Feature: gene Location: 1196-3004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1460-2282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1460-2282 bp Feature: domain Description: Intron_maturas2 Location: 2405-2660 bp Feature: domain Description: Intron_maturas2 Location: 2405-2660 bp Feature: gene Location: 3537-3737 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HTH_17 (pfam12728), COG3943 (Uncharacterized conserved protein )