myRT

myRT report for GCA_008571475.1_ASM857147v1

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Seq: VWAH01000095.1 Bacteroides finegoldii strain BIOML-A3 scaffold107_size4199, whole genome shotgun sequence (4199 bp)
Overview 1 RT 1: 1-3883 bp Neighborhood of RT #1 [1, 3888] Bac_Flav_CT_N RVT-GII Intron_maturas2 Bac_Flav_CT_N TraO Feature: gene Location: 1-261 bp Feature: domain Description: Bac_Flav_CT_N Location: 4-241 bp Feature: domain Description: Bac_Flav_CT_N Location: 4-241 bp Feature: gene Location: 432-767 bp Feature: gene Location: 802-2613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1066-1888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 066-1 888 bp Feature: domain Description: Intron_maturas2 Location: 1960-2266 bp Feature: domain Description: Intron_maturas2 Location: 1 960-2266 bp Feature: gene Location: 2603-3310 bp Feature: domain Description: Bac_Flav_CT_N Location: 2726-3287 bp Feature: domain Description: Bac_Flav_CT_N Location: 2726-3287 bp Feature: gene Location: 3313-3888 bp Feature: domain Description: TraO Location: 3388-3883 bp Feature: domain Description: TraO Location: 3388-3883 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_N (TIGR03780), TraO (pfam10626), RVT-GII, Intron_maturas2 (pfam01348)

Seq: VWAH01000011.1 Bacteroides finegoldii strain BIOML-A3 scaffold11_size116248, whole genome shotgun sequence (116248 bp)
Overview 1 RT 1: 17420-29226 bp Neighborhood of RT #1 [17420, 29226] rpsA DUF4011 DEXXQc_SF1 KOG1803 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 17420-19222 bp Feature: domain Description: rpsA Location: 17489-19106 bp Feature: domain Description: rpsA Location: 17489-19106 bp Feature: gene Location: 19319-25276 bp Feature: domain Description: DUF4011 Location: 20549-21062 bp Feature: domain Description: DUF4011 Location: 2 0549-2 1062 bp Feature: domain Description: DEXXQc_SF1 Location: 21401-23588 bp Feature: domain Description: DEXXQc_SF1 Location: 2 1401-2 3588 bp Feature: domain Description: KOG1803 Location: 23723-24104 bp Feature: domain Description: KOG1803 Location: 2 372 3-2 4104 bp Feature: domain Description: MTES_1575 Location: 24260-24545 bp Feature: domain Description: MTES_1575 Location: 2 42 60-2 4545 bp Feature: domain Description: DUF3320 Location: 24785-24926 bp Feature: domain Description: DUF332 0 Location: 2 4785-2 492 6 bp Feature: gene Location: 25278-26408 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 25599-26142 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 5599-2 6142 bp Feature: gene Location: 26614-28773 bp Feature: gene Location: 29056-29226 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase ), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons

Seq: VWAH01000013.1 Bacteroides finegoldii strain BIOML-A3 scaffold13_size104594, whole genome shotgun sequence (104594 bp)
Overview 1 RT 1: 86611-94506 bp Neighborhood of RT #1 [86611, 94547] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 Feature: gene Location: 86611-86925 bp Feature: domain Description: DUF3876 Location: 86665-86914 bp Feature: domain Description: DUF3 876 Location: 86665-86914 bp Feature: gene Location: 86940-88634 bp Feature: domain Description: Bac_Flav_CT_G Location: 87060-88626 bp Feature: domain Description: Bac_Flav_CT_G Location: 87060-88626 bp Feature: gene Location: 88631-90292 bp Feature: RT Description: RVT_N Location: 88685-88928 bp Feature: RT Description: RVT_N Location: 88685-88928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88973-89621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88973 -89621 bp Feature: domain Description: GIIM Note: maturase Location: 89675-89906 bp Feature: domain Description: GIIM Note: maturase Location: 89675-89906 bp Feature: gene Location: 90374-90754 bp Feature: gene Location: 90876-91706 bp Feature: domain Description: Bac_Flav_CT_G Location: 90996-91692 bp Feature: domain Description: Bac_Flav_CT_G Location: 90996-91692 bp Feature: gene Location: 91687-93414 bp Feature: RT Description: RVT_N Location: 91792-92035 bp Feature: RT Description: RVT_N Location: 91792-9203 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92080-92728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92080-92728 bp Feature: domain Description: GIIM Note: maturase Location: 92779-93013 bp Feature: domain Description: GIIM Note: maturase Location: 92779-93 013 bp Feature: gene Location: 93970-94215 bp Feature: domain Description: Bac_Flav_CT_G Location: 93973-94198 bp Feature: domain Description: Bac_Flav_CT_G Location: 93 973 -94198 bp Feature: gene Location: 94212-94547 bp Feature: domain Description: DUF4133 Location: 94239-94506 bp Feature: domain Description: DUF413 3 Location: 9423 9-94506 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571)

Seq: VWAH01000003.1 Bacteroides finegoldii strain BIOML-A3 scaffold3_size248791, whole genome shotgun sequence (248791 bp)
Overview 1 RT 1: 62381-66451 bp Neighborhood of RT #1 [62381, 66528] RVT-DGRs TipAS COG2369 LPD3 Feature: gene Location: 62381-62623 bp Feature: gene Location: 62827-63312 bp Feature: gene Location: 63309-64610 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 63519-64197 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 63519-64 197 bp Feature: gene Location: 64986-65219 bp Feature: gene Location: 65317-66528 bp Feature: domain Description: TipAS Location: 65341-65644 bp Feature: domain Description: TipAS Location: 6534 1-6564 4 bp Feature: domain Description: COG2369 Location: 65764-65950 bp Feature: domain Description: COG2369 Location: 65764 -65950 bp Feature: domain Description: LPD3 Location: 66169-66451 bp Feature: domain Description: LPD3 Location: 66169-664 51 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, TipAS (pfam07739), COG2369 (Uncharacterized conserved protein, contains phage Mu gpF-like domain ), LPD3 (pfam18798)

Seq: VWAH01000068.1 Bacteroides finegoldii strain BIOML-A3 scaffold68_size15376, whole genome shotgun sequence (15193 bp)
Overview 1 RT 1: 1-3665 bp Neighborhood of RT #1 [1, 3685] RVT-GII Intron_maturas2 COG3943 HTH_17 Feature: gene Location: 1-387 bp Feature: gene Location: 920-2728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1184-2006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1184-2006 bp Feature: domain Description: Intron_maturas2 Location: 2129-2384 bp Feature: domain Description: Intron_maturas2 Location: 2129-2384 bp Feature: gene Location: 2943-3305 bp Feature: domain Description: COG3943 Location: 2982-3231 bp Feature: domain Description: COG3943 Location: 2982-3231 bp Feature: gene Location: 3380-3685 bp Feature: domain Description: HTH_17 Location: 3518-3665 bp Feature: domain Description: HTH_17 Location: 35 18-3665 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3943 (Uncharacterized conserved protein ), HTH_17 (pfam12728), RVT-GII, Intron_maturas2 (pfam01348)

Seq: VWAH01000007.1 Bacteroides finegoldii strain BIOML-A3 scaffold7_size160441, whole genome shotgun sequence (160361 bp)
Overview 1 RT 1: 97540-107018 bp Neighborhood of RT #1 [97540, 107018] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 97540-104286 bp Feature: domain Description: Laminin_G_3 Location: 99004-99094 bp Feature: domain Description: Laminin_G_3 Location: 99004-99094 bp Feature: domain Description: Laminin_G_3 Location: 99742-100165 bp Feature: domain Description: Laminin_G_3 Location: 99742-10016 5 bp Feature: gene Location: 104537-104737 bp Feature: gene Location: 104809-106113 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 105019-105697 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 105019-1056 97 bp Feature: gene Location: 106110-106595 bp Feature: gene Location: 106776-107018 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: VWAH01000008.1 Bacteroides finegoldii strain BIOML-A3 scaffold8_size150881, whole genome shotgun sequence (150881 bp)
Overview 1 RT 1: 30993-36097 bp 2 RT 2: 42894-44724 bp Neighborhood of RT #1 [30993, 36097] Toprim_2 RVT-GII Intron_maturas2 Neighborhood of RT #2 [42894, 44724] RVT-Retrons Feature: gene Location: 30993-32396 bp Feature: gene Location: 32607-33536 bp Feature: domain Description: Toprim_2 Location: 33159-33447 bp Feature: domain Description: Toprim_2 Location: 33159-33447 bp Feature: gene Location: 33508-35316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33772-34594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337 7 2-34594 bp Feature: domain Description: Intron_maturas2 Location: 34663-34972 bp Feature: domain Description: Intron_maturas2 Location: 34663-3497 2 bp Feature: gene Location: 35605-35748 bp Feature: gene Location: 35864-36097 bp Feature: gene Location: 42894-43034 bp Feature: gene Location: 43300-43446 bp Feature: gene Location: 43587-44222 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43743-44187 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 437 43-44187 bp Feature: gene Location: 44281-44448 bp Feature: gene Location: 44584-44724 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348), RVT-Retrons