myRT

myRT report for GCA_008571515.1_ASM857151v1

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Seq: VWAG01000103.1 Bacteroides finegoldii strain BIOML-A2 scaffold110_size4701, whole genome shotgun sequence (4701 bp)
Overview 1 RT 1: 1017-4698 bp Neighborhood of RT #1 [1017, 4698] HTH_17 COG3943 RVT-GII Intron_maturas2 Feature: gene Location: 1017-1322 bp Feature: domain Description: HTH_17 Location: 1155-1302 bp Feature: domain Description: HTH_1 7 Location: 1 1 55-1 302 bp Feature: gene Location: 1397-1759 bp Feature: domain Description: COG3943 Location: 1436-1685 bp Feature: domain Description: COG3943 Location: 1 436-1 685 bp Feature: gene Location: 1974-3782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2238-3060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2238-3060 bp Feature: domain Description: Intron_maturas2 Location: 3183-3438 bp Feature: domain Description: Intron_maturas2 Location: 31 83-3438 bp Feature: gene Location: 4315-4698 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), COG3943 (Uncharacterized conserved protein ), RVT-GII, Intron_maturas2 (pfam01348)

Seq: VWAG01000012.1 Bacteroides finegoldii strain BIOML-A2 scaffold12_size104594, whole genome shotgun sequence (104594 bp)
Overview 1 RT 1: 10380-17973 bp Neighborhood of RT #1 [10380, 17984] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 10380-10625 bp Feature: domain Description: Bac_Flav_CT_G Location: 10383-10608 bp Feature: domain Description: Bac_Flav_CT_G Location: 10383-10608 bp Feature: gene Location: 10837-10983 bp Feature: gene Location: 11181-12908 bp Feature: RT Description: RVT_N Location: 11286-11529 bp Feature: RT Description: RVT_N Location: 112 86-1152 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11574-12222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11574-12 2 2 2 bp Feature: domain Description: GIIM Note: maturase Location: 12273-12507 bp Feature: domain Description: GIIM Note: maturase Location: 12 2 73-12 507 bp Feature: gene Location: 12889-13719 bp Feature: domain Description: Bac_Flav_CT_G Location: 13009-13705 bp Feature: domain Description: Bac_Flav_CT_G Location: 13009-13705 bp Feature: gene Location: 13898-14047 bp Feature: gene Location: 14303-15964 bp Feature: RT Description: RVT_N Location: 14357-14600 bp Feature: RT Description: RVT_N Location: 14357-14600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14645-15293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14645-152 93 bp Feature: domain Description: GIIM Note: maturase Location: 15347-15578 bp Feature: domain Description: GIIM Note: maturase Location: 15347-15578 bp Feature: gene Location: 15961-17655 bp Feature: domain Description: Bac_Flav_CT_G Location: 16081-17647 bp Feature: domain Description: Bac_Flav_CT_G Location: 16081-17647 bp Feature: gene Location: 17670-17984 bp Feature: domain Description: DUF3876 Location: 17724-17973 bp Feature: domain Description: DUF3876 Location: 1772 4-17973 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3876 (pfam12992)

Seq: VWAG01000126.1 Bacteroides finegoldii strain BIOML-A2 scaffold178_size2944, whole genome shotgun sequence (2944 bp)
Overview 1 RT 1: 3-2860 bp Neighborhood of RT #1 [3, 2943] RVT_N RVT-GII GIIM T4SS-DNA_transf Feature: gene Location: 3-194 bp Feature: gene Location: 199-1851 bp Feature: RT Description: RVT_N Location: 253-496 bp Feature: RT Description: RVT_N Location: 253 -496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 541-1189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 541-1189 bp Feature: domain Description: GIIM Note: maturase Location: 1243-1474 bp Feature: domain Description: GIIM Note: maturase Location: 1243 -1474 bp Feature: gene Location: 2168-2317 bp Feature: gene Location: 2488-2943 bp Feature: domain Description: T4SS-DNA_transf Location: 2497-2860 bp Feature: domain Description: T4SS-DNA_transf Location: 2497-2860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), T4SS-DNA_transf (pfam02534)

Seq: VWAG01000127.1 Bacteroides finegoldii strain BIOML-A2 scaffold183_size2880, whole genome shotgun sequence (2880 bp)
Overview 1 RT 1: 170-2878 bp Neighborhood of RT #1 [170, 2877] DUF4134 RVT_N RVT-GII GIIM DUF4134 Feature: gene Location: 170-385 bp Feature: domain Description: DUF4134 Location: 188-371 bp Feature: domain Description: DUF4 134 Location: 188-371 bp Feature: gene Location: 510-719 bp Feature: gene Location: 1001-2656 bp Feature: RT Description: RVT_N Location: 1058-1295 bp Feature: RT Description: RVT_N Location: 1058-1295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1346-1994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134 6-1994 bp Feature: domain Description: GIIM Note: maturase Location: 2051-2282 bp Feature: domain Description: GIIM Note: maturase Location: 2051-2282 bp Feature: gene Location: 2653-2877 bp Feature: domain Description: DUF4134 Location: 2800-2878 bp Feature: domain Description: DUF4 134 Location: 2800-2878 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4134 (pfam13572)

Seq: VWAG01000033.1 Bacteroides finegoldii strain BIOML-A2 scaffold33_size50475, whole genome shotgun sequence (50475 bp)
Overview 1 RT 1: 1-3592 bp 2 RT 2: 28679-32826 bp Neighborhood of RT #1 [1, 3645] Bac_Flav_CT_N RVT-GII Intron_maturas2 Bac_Flav_CT_N TraO Neighborhood of RT #2 [28679, 32826] TipAS COG2369 LPD3 RVT-DGRs Feature: gene Location: 1-261 bp Feature: domain Description: Bac_Flav_CT_N Location: 4-241 bp Feature: domain Description: Bac_Flav_CT_N Location: 4-241 bp Feature: gene Location: 432-767 bp Feature: gene Location: 802-2613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1066-1888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1066-1888 bp Feature: domain Description: Intron_maturas2 Location: 1960-2266 bp Feature: domain Description: Intron_maturas2 Location: 1960-2266 bp Feature: gene Location: 2603-3310 bp Feature: domain Description: Bac_Flav_CT_N Location: 2726-3287 bp Feature: domain Description: Bac_Flav_CT_N Location: 2726-3287 bp Feature: gene Location: 3313-3645 bp Feature: domain Description: TraO Location: 3388-3592 bp Feature: domain Description: TraO Location: 3388-35 92 bp Feature: gene Location: 28679-29890 bp Feature: domain Description: TipAS Location: 28703-29006 bp Feature: domain Description: TipAS Location: 28703-29006 bp Feature: domain Description: COG2369 Location: 29126-29312 bp Feature: domain Description: COG2369 Location: 29126-29312 bp Feature: domain Description: LPD3 Location: 29531-29813 bp Feature: domain Description: LPD3 Location: 295 31-29813 bp Feature: gene Location: 29988-30221 bp Feature: gene Location: 30597-31898 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 30807-31485 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 30807-31485 bp Feature: gene Location: 31895-32380 bp Feature: gene Location: 32584-32826 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_N (TIGR03780), TraO (pfam10626), RVT-GII, Intron_maturas2 (pfam01348), TipAS (pfam07739), COG2369 (Uncharacterized conserved protein, contains phage Mu gpF-like domain ), LPD3 (pfam18798), RVT-DGRs

Seq: VWAG01000003.1 Bacteroides finegoldii strain BIOML-A2 scaffold3_size261546, whole genome shotgun sequence (261546 bp)
Overview 1 RT 1: 63199-72677 bp Neighborhood of RT #1 [63199, 72677] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 63199-69945 bp Feature: domain Description: Laminin_G_3 Location: 64663-64753 bp Feature: domain Description: Laminin_G_3 Location: 6 46 6 3-6 4753 bp Feature: domain Description: Laminin_G_3 Location: 65401-65824 bp Feature: domain Description: Laminin_G_3 Location: 6 5401-6 5824 bp Feature: gene Location: 70196-70396 bp Feature: gene Location: 70468-71772 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 70678-71356 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 706 78-71356 bp Feature: gene Location: 71769-72254 bp Feature: gene Location: 72435-72677 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: VWAG01000050.1 Bacteroides finegoldii strain BIOML-A2 scaffold50_size30782, whole genome shotgun sequence (30782 bp)
Overview 1 RT 1: 28868-30698 bp Neighborhood of RT #1 [28868, 30698] RVT-Retrons Feature: gene Location: 28868-29008 bp Feature: gene Location: 29274-29420 bp Feature: gene Location: 29561-30196 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29717-30161 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 297 17 -30161 bp Feature: gene Location: 30255-30422 bp Feature: gene Location: 30558-30698 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: VWAG01000008.1 Bacteroides finegoldii strain BIOML-A2 scaffold8_size116248, whole genome shotgun sequence (116248 bp)
Overview 1 RT 1: 84700-98713 bp Neighborhood of RT #1 [84700, 98829] GlnA3 RVT-Retrons DUF4011 DEXXQc_SF1 KOG1803 MTES_1575 DUF3320 rpsA Feature: gene Location: 84700-86889 bp Feature: domain Description: GlnA3 Location: 84772-86887 bp Feature: domain Description: GlnA3 Location: 8 4772-8 68 8 7 bp Feature: gene Location: 87476-89635 bp Feature: gene Location: 89841-90971 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 90162-90705 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 90162-90705 bp Feature: gene Location: 90973-96930 bp Feature: domain Description: DUF4011 Location: 92203-92716 bp Feature: domain Description: DUF4011 Location: 92203-92716 bp Feature: domain Description: DEXXQc_SF1 Location: 93055-95242 bp Feature: domain Description: DEXXQc_SF1 Location: 93055-95242 bp Feature: domain Description: KOG1803 Location: 95377-95758 bp Feature: domain Description: KOG18 03 Location: 95377-95758 bp Feature: domain Description: MTES_1575 Location: 95914-96199 bp Feature: domain Description: MTES_1575 Location: 95914-96199 bp Feature: domain Description: DUF3320 Location: 96439-96580 bp Feature: domain Description: DUF3320 Location: 96439-9658 0 bp Feature: gene Location: 97027-98829 bp Feature: domain Description: rpsA Location: 97096-98713 bp Feature: domain Description: rpsA Location: 97096-98 713 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase ), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)