myRT

myRT report for GCA_008571525.1_ASM857152v1

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Seq: VWAF01000011.1 Bacteroides finegoldii strain BIOML-A1 scaffold11_size104594, whole genome shotgun sequence (104594 bp)
Overview 1 RT 1: 86611-94506 bp Neighborhood of RT #1 [86611, 94547] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 Feature: gene Location: 86611-86925 bp Feature: domain Description: DUF3876 Location: 86665-86914 bp Feature: domain Description: DUF3876 Location: 86665-8691 4 bp Feature: gene Location: 86940-88634 bp Feature: domain Description: Bac_Flav_CT_G Location: 87060-88626 bp Feature: domain Description: Bac_Flav_CT_G Location: 87060-88626 bp Feature: gene Location: 88631-90292 bp Feature: RT Description: RVT_N Location: 88685-88928 bp Feature: RT Description: RVT_N Location: 88685-88928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88973-89621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88973-89621 bp Feature: domain Description: GIIM Note: maturase Location: 89675-89906 bp Feature: domain Description: GIIM Note: maturase Location: 89675-89906 bp Feature: gene Location: 90374-90754 bp Feature: gene Location: 90876-91706 bp Feature: domain Description: Bac_Flav_CT_G Location: 90996-91692 bp Feature: domain Description: Bac_Flav_CT_G Location: 90996-91 692 bp Feature: gene Location: 91687-93414 bp Feature: RT Description: RVT_N Location: 91792-92035 bp Feature: RT Description: RVT_N Location: 91 792-92035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92080-92728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92080-92728 bp Feature: domain Description: GIIM Note: maturase Location: 92779-93013 bp Feature: domain Description: GIIM Note: maturase Location: 92779-9301 3 bp Feature: gene Location: 93970-94215 bp Feature: domain Description: Bac_Flav_CT_G Location: 93973-94198 bp Feature: domain Description: Bac_Flav_CT_G Location: 93973-941 98 bp Feature: gene Location: 94212-94547 bp Feature: domain Description: DUF4133 Location: 94239-94506 bp Feature: domain Description: DUF41 33 Location: 94239-94506 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571)

Seq: VWAF01000036.1 Bacteroides finegoldii strain BIOML-A1 scaffold36_size45801, whole genome shotgun sequence (45717 bp)
Overview 1 RT 1: 343-4099 bp 2 RT 2: 29186-33333 bp Neighborhood of RT #1 [343, 4152] Bac_Flav_CT_N RVT-GII Intron_maturas2 Bac_Flav_CT_N TraO Neighborhood of RT #2 [29186, 33333] TipAS COG2369 LPD3 RVT-DGRs Feature: gene Location: 343-768 bp Feature: domain Description: Bac_Flav_CT_N Location: 346-748 bp Feature: domain Description: Bac_Flav_CT_N Location: 346-748 bp Feature: gene Location: 939-1274 bp Feature: gene Location: 1309-3120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1573-2395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1573-2 395 bp Feature: domain Description: Intron_maturas2 Location: 2467-2773 bp Feature: domain Description: Intron_maturas2 Location: 2 467-2 773 bp Feature: gene Location: 3110-3817 bp Feature: domain Description: Bac_Flav_CT_N Location: 3233-3794 bp Feature: domain Description: Bac_Flav_CT_N Location: 32 33-3794 bp Feature: gene Location: 3820-4152 bp Feature: domain Description: TraO Location: 3895-4099 bp Feature: domain Description: TraO Location: 3895-4099 bp Feature: gene Location: 29186-30397 bp Feature: domain Description: TipAS Location: 29210-29513 bp Feature: domain Description: TipAS Location: 2 92 10-2 9513 bp Feature: domain Description: COG2369 Location: 29633-29819 bp Feature: domain Description: COG2 369 Location: 2 9633-2 9819 bp Feature: domain Description: LPD3 Location: 30038-30320 bp Feature: domain Description: LPD3 Location: 30038-3032 0 bp Feature: gene Location: 30495-30728 bp Feature: gene Location: 31104-32405 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31314-31992 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31314-31992 bp Feature: gene Location: 32402-32887 bp Feature: gene Location: 33091-33333 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), Bac_Flav_CT_N (TIGR03780), TipAS (pfam07739), COG2369 (Uncharacterized conserved protein, contains phage Mu gpF-like domain ), LPD3 (pfam18798), RVT-DGRs

Seq: VWAF01000003.1 Bacteroides finegoldii strain BIOML-A1 scaffold3_size295810, whole genome shotgun sequence (295810 bp)
Overview 1 RT 1: 188793-194150 bp Neighborhood of RT #1 [188793, 198271] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 188793-189035 bp Feature: gene Location: 189216-189701 bp Feature: gene Location: 189698-191002 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 189908-190586 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 189908-190586 bp Feature: gene Location: 191074-191322 bp Feature: gene Location: 191525-198271 bp Feature: domain Description: Laminin_G_3 Location: 192989-193079 bp Feature: domain Description: Laminin_G_3 Location: 192989-193 079 bp Feature: domain Description: Laminin_G_3 Location: 193727-194150 bp Feature: domain Description: Laminin_G_3 Location: 193 727-194150 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: VWAF01000043.1 Bacteroides finegoldii strain BIOML-A1 scaffold43_size30782, whole genome shotgun sequence (30782 bp)
Overview 1 RT 1: 28868-30698 bp Neighborhood of RT #1 [28868, 30698] RVT-Retrons Feature: gene Location: 28868-29008 bp Feature: gene Location: 29274-29420 bp Feature: gene Location: 29561-30196 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29717-30161 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29717-30161 bp Feature: gene Location: 30255-30422 bp Feature: gene Location: 30558-30698 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: VWAF01000079.1 Bacteroides finegoldii strain BIOML-A1 scaffold79_size6102, whole genome shotgun sequence (6102 bp)
Overview 1 RT 1: 2602-6100 bp Neighborhood of RT #1 [2602, 6100] HTH_17 COG3943 RVT-GII Intron_maturas2 Feature: gene Location: 2602-2907 bp Feature: domain Description: HTH_17 Location: 2740-2887 bp Feature: domain Description: HTH_17 Location: 2740-2887 bp Feature: gene Location: 2982-3344 bp Feature: domain Description: COG3943 Location: 3021-3270 bp Feature: domain Description: COG3943 Location: 3021-3270 bp Feature: gene Location: 3559-5367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3823-4645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3823-4645 bp Feature: domain Description: Intron_maturas2 Location: 4768-5023 bp Feature: domain Description: Intron_maturas2 Location: 4768-5 023 bp Feature: gene Location: 5900-6100 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), COG3943 (Uncharacterized conserved protein ), RVT-GII, Intron_maturas2 (pfam01348)

Seq: VWAF01000008.1 Bacteroides finegoldii strain BIOML-A1 scaffold8_size116248, whole genome shotgun sequence (116248 bp)
Overview 1 RT 1: 84700-98713 bp Neighborhood of RT #1 [84700, 98829] GlnA3 RVT-Retrons DUF4011 DEXXQc_SF1 KOG1803 MTES_1575 DUF3320 rpsA Feature: gene Location: 84700-86889 bp Feature: domain Description: GlnA3 Location: 84772-86887 bp Feature: domain Description: GlnA3 Location: 84772-86 887 bp Feature: gene Location: 87476-89635 bp Feature: gene Location: 89841-90971 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 90162-90705 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9016 2-90705 bp Feature: gene Location: 90973-96930 bp Feature: domain Description: DUF4011 Location: 92203-92716 bp Feature: domain Description: DUF4011 Location: 92203-92716 bp Feature: domain Description: DEXXQc_SF1 Location: 93055-95242 bp Feature: domain Description: DEXXQc_SF1 Location: 93055-95242 bp Feature: domain Description: KOG1803 Location: 95377-95758 bp Feature: domain Description: KOG1803 Location: 95377-95758 bp Feature: domain Description: MTES_1575 Location: 95914-96199 bp Feature: domain Description: MTES_1575 Location: 95914-96 199 bp Feature: domain Description: DUF3320 Location: 96439-96580 bp Feature: domain Description: DUF3320 Location: 96 439-96 580 bp Feature: gene Location: 97027-98829 bp Feature: domain Description: rpsA Location: 97096-98713 bp Feature: domain Description: rpsA Location: 97096 -98713 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase ), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)