myRT

myRT report for GCA_008571545.1_ASM857154v1

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Seq: VWAC01000107.1 Bacteroides faecis strain BIOML-A4 scaffold107_size2632, whole genome shotgun sequence (2632 bp)
Overview 1 RT 1: 134-2604 bp Neighborhood of RT #1 [134, 2630] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 134-409 bp Feature: gene Location: 375-1796 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 747-1476 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 747-1 476 bp Feature: gene Location: 1811-2191 bp Feature: domain Description: Avd_like Location: 1838-2144 bp Feature: domain Description: Avd_like Location: 1 838-21 44 bp Feature: gene Location: 2337-2630 bp Feature: domain Description: DUF1566 Location: 2358-2604 bp Feature: domain Description: DUF1 566 Location: 2358-2604 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), DUF1566 (pfam07603), RVT-DGRs

Seq: VWAC01000019.1 Bacteroides faecis strain BIOML-A4 scaffold19_size93181, whole genome shotgun sequence (93181 bp)
Overview 1 RT 1: 49312-54081 bp Neighborhood of RT #1 [49312, 54110] INTN1_C_like RVT-GII Intron_maturas2 HNHc HTH_18 Feature: gene Location: 49312-49647 bp Feature: gene Location: 49810-50214 bp Feature: domain Description: INTN1_C_like Location: 49882-50191 bp Feature: domain Description: INTN1_C_like Location: 49882 -50191 bp Feature: gene Location: 50629-52140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50671-51415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50671-51415 bp Feature: domain Description: Intron_maturas2 Location: 51496-51793 bp Feature: domain Description: Intron_maturas2 Location: 51496-51793 bp Feature: domain Description: HNHc Note: nucleases Location: 51967-52072 bp Feature: domain Description: HNHc Note: nucleases Location: 51967-52 072 bp Feature: gene Location: 52700-52957 bp Feature: gene Location: 52971-54110 bp Feature: domain Description: HTH_18 Location: 53841-54081 bp Feature: domain Description: HTH_18 Location: 53841-54081 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INTN1_C_like (cd01185), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), HTH_18 (pfam12833)

Seq: VWAC01000001.1 Bacteroides faecis strain BIOML-A4 scaffold1_size802690, whole genome shotgun sequence (802690 bp)
Overview 1 RT 1: 62355-72574 bp Neighborhood of RT #1 [62355, 72585] DUF1566 RVT-DGRs Avd_like DUF1566 Feature: gene Location: 62355-64184 bp Feature: gene Location: 64247-64600 bp Feature: gene Location: 64591-66012 bp Feature: domain Description: DUF1566 Location: 64663-64807 bp Feature: domain Description: DUF1566 Location: 64663 -64807 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 64993-65776 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 64993 -65776 bp Feature: gene Location: 66025-66426 bp Feature: domain Description: Avd_like Location: 66064-66403 bp Feature: domain Description: Avd_like Location: 66064-66403 bp Feature: gene Location: 66556-72585 bp Feature: domain Description: DUF1566 Location: 72268-72574 bp Feature: domain Description: DUF1566 Location: 72268-72574 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), RVT-DGRs, Avd_like (cd16376)

Seq: VWAC01000026.1 Bacteroides faecis strain BIOML-A4 scaffold26_size82145, whole genome shotgun sequence (82145 bp)
Overview 1 RT 1: 8441-11669 bp Neighborhood of RT #1 [8441, 11761] Virulence_RhuM RVT-Retrons HTH_17 Feature: gene Location: 8441-8656 bp Feature: domain Description: Virulence_RhuM Location: 8483-8588 bp Feature: domain Description: Virulence_RhuM Location: 84 83-8588 bp Feature: gene Location: 8921-9802 bp Feature: gene Location: 9833-10690 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9995-10520 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9995-10520 bp Feature: gene Location: 10715-10930 bp Feature: gene Location: 11396-11761 bp Feature: domain Description: HTH_17 Location: 11531-11669 bp Feature: domain Description: HTH_17 Location: 11531-11669 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), Virulence_RhuM (pfam13310), RVT-Retrons

Seq: VWAC01000028.1 Bacteroides faecis strain BIOML-A4 scaffold28_size77680, whole genome shotgun sequence (77680 bp)
Overview 1 RT 1: 58988-71804 bp Neighborhood of RT #1 [58988, 71804] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 KOG1803 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 58988-60784 bp Feature: domain Description: rpsA Location: 59057-60668 bp Feature: domain Description: rpsA Location: 5 905 7-60668 bp Feature: gene Location: 60953-66826 bp Feature: domain Description: DUF4011 Location: 62117-62627 bp Feature: domain Description: DUF4011 Location: 62117-62627 bp Feature: domain Description: DEXXQc_SF1 Location: 62966-63575 bp Feature: domain Description: DEXXQc_SF1 Location: 62966-635 75 bp Feature: domain Description: DEXXQc_SF1 Location: 64238-65153 bp Feature: domain Description: DEXXQc_SF1 Location: 64238-65 15 3 bp Feature: domain Description: KOG1803 Location: 65288-65666 bp Feature: domain Description: KOG1803 Location: 65 288-65 666 bp Feature: domain Description: MTES_1575 Location: 65825-66113 bp Feature: domain Description: MTES_15 75 Location: 65 825 -66113 bp Feature: domain Description: DUF3320 Location: 66344-66464 bp Feature: domain Description: DUF3320 Location: 66344-66464 bp Feature: gene Location: 66868-68001 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 67192-67738 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 67192-67738 bp Feature: gene Location: 68206-70392 bp Feature: gene Location: 71295-71804 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase ), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons

Seq: VWAC01000030.1 Bacteroides faecis strain BIOML-A4 scaffold30_size70058, whole genome shotgun sequence (70058 bp)
Overview 1 RT 1: 8357-13416 bp Neighborhood of RT #1 [8357, 13661] RVT-Retrons DNA_processg_A Feature: gene Location: 8357-8899 bp Feature: gene Location: 9215-10135 bp Feature: gene Location: 10137-11597 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10338-10968 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10338-1096 8 bp Feature: gene Location: 11911-12699 bp Feature: gene Location: 12735-13661 bp Feature: domain Description: DNA_processg_A Location: 12939-13416 bp Feature: domain Description: DNA_processg_A Location: 12939-13416 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DNA_processg_A (pfam02481)