myRT

myRT report for GCA_008571565.1_ASM857156v1

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Seq: VWAB01000107.1 Bacteroides faecis strain BIOML-A3 scaffold107_size11759, whole genome shotgun sequence (11759 bp)
Overview 1 RT 1: 7831-11760 bp Neighborhood of RT #1 [7831, 11759] HTH_XRE S24_LexA-like INTN1_C_like RVT-GII Intron_maturas2 HNHc INTN1_C_like Feature: gene Location: 7831-8595 bp Ori: KAA5255714.1 Feature: domain Description: HTH_XRE Location: 7846-8020 bp Feature: domain Description: HTH_XRE Location: 7846-8020 bp Feature: domain Description: S24_LexA-like Location: 8287-8536 bp Feature: domain Description: S24_LexA-like Location: 8287-8536 bp Feature: gene Location: 8833-9198 bp Ori: KAA5255715.1 Feature: domain Description: INTN1_C_like Location: 8953-9133 bp Feature: domain Description: INTN1 _C_like Location: 8953-91 33 bp Feature: gene Location: 9188-11008 bp Ori: KAA5255716.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9452-10274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9452-1 0274 bp Feature: domain Description: Intron_maturas2 Location: 10349-10655 bp Feature: domain Description: Intron_maturas2 Location: 1 0349-1 0655 bp Feature: domain Description: HNHc Note: nucleases Location: 10832-10949 bp Feature: domain Description: HNHc Note: nucleases Location: 1 0832-1 0949 bp Feature: gene Location: 11574-11759 bp Feature: domain Description: INTN1_C_like Location: 11580-11760 bp Feature: domain Description: INTN1 _C_like Location: 1 1 580-1 1 760 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), S24_LexA-like (cd06529), INTN1_C_like (cd01185), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VWAB01000026.1 Bacteroides faecis strain BIOML-A3 scaffold26_size151710, whole genome shotgun sequence (151049 bp)
Overview 1 RT 1: 135085-139574 bp 2 RT 2: 146435-150551 bp Neighborhood of RT #1 [135085, 139609] Bac_Flav_CT_J RVT-GII Intron_maturas2 HNHc DUF4141 DUF3876 Neighborhood of RT #2 [146435, 150928] Relaxase YWFCY RVT_N RVT-GII GIIM Feature: gene Location: 135085-136089 bp Ori: KAA5262494.1 Gene: traJ Feature: domain Description: Bac_Flav_CT_J Location: 135094-136060 bp Feature: domain Description: Bac_Flav_CT_J Location: 135094-136060 bp Feature: gene Location: 136093-136629 bp Feature: gene Location: 136622-138427 bp Ori: KAA5262496.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136886-137708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136886-137708 bp Feature: domain Description: Intron_maturas2 Location: 137867-138236 bp Feature: domain Description: Intron_maturas2 Location: 137867-1382 36 bp Feature: domain Description: HNHc Note: nucleases Location: 138260-138401 bp Feature: domain Description: HNHc Note: nucleases Location: 1382 60-138401 bp Feature: gene Location: 138978-139205 bp Ori: KAA5262497.1 Feature: domain Description: DUF4141 Location: 138990-139146 bp Feature: domain Description: DUF4141 Location: 138990-139146 bp Feature: gene Location: 139229-139609 bp Ori: KAA5262498.1 Feature: domain Description: DUF3876 Location: 139310-139574 bp Feature: domain Description: DUF3876 Location: 139310-139574 bp Feature: gene Location: 146435-147682 bp Ori: KAA5262508.1 Feature: domain Description: Relaxase Location: 146627-146987 bp Feature: domain Description: Relaxase Location: 14662 7-146987 bp Feature: gene Location: 147713-148636 bp Feature: domain Description: YWFCY Location: 147722-147899 bp Feature: domain Description: YWFCY Location: 14772 2 -147899 bp Feature: gene Location: 149276-150928 bp Ori: KAA5262509.1 Gene: ltrA Feature: domain Description: RVT_N Location: 149330-149573 bp Feature: domain Description: RVT_N Location: 149330-149573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 149618-150266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 149618-1502 66 bp Feature: domain Description: GIIM Note: maturase Location: 150320-150551 bp Feature: domain Description: GIIM Note: maturase Location: 15032 0-150551 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_J (TIGR03782), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605), DUF3876 (pfam12992), Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), GIIM (pfam08388)

Seq: VWAB01000041.1 Bacteroides faecis strain BIOML-A3 scaffold41_size53989, whole genome shotgun sequence (53989 bp)
Overview 1 RT 1: 2847-15664 bp Neighborhood of RT #1 [2847, 15664] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 KOG1803 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 2847-4643 bp Ori: KAA5261351.1 Feature: domain Description: rpsA Location: 2916-4527 bp Feature: domain Description: rpsA Location: 2916-4527 bp Feature: gene Location: 4812-10685 bp Ori: KAA5261352.1 Feature: domain Description: DUF4011 Location: 5976-6486 bp Feature: domain Description: DUF4011 Location: 5976-6486 bp Feature: domain Description: DEXXQc_SF1 Location: 6825-7434 bp Feature: domain Description: DEXXQc_SF1 Location: 6825-743 4 bp Feature: domain Description: DEXXQc_SF1 Location: 8097-9012 bp Feature: domain Description: DEXXQc_SF1 Location: 8097-9012 bp Feature: domain Description: KOG1803 Location: 9147-9525 bp Feature: domain Description: KOG1803 Location: 9147-9525 bp Feature: domain Description: MTES_1575 Location: 9684-9972 bp Feature: domain Description: MTES_1575 Location: 9684-9972 bp Feature: domain Description: DUF3320 Location: 10203-10323 bp Feature: domain Description: DUF3 3 20 Location: 10203 -103 23 bp Feature: gene Location: 10727-11860 bp Ori: KAA5261353.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11051-11597 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11051-11597 bp Feature: gene Location: 12065-14224 bp Feature: gene Location: 15464-15664 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase ), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons

Seq: VWAB01000051.1 Bacteroides faecis strain BIOML-A3 scaffold51_size60994, whole genome shotgun sequence (59997 bp)
Overview 1 RT 1: 33934-39323 bp Neighborhood of RT #1 [33934, 39337] DUF1566 Avd_like RVT-DGRs RVT-GII DUF4134 DUF4134 Feature: gene Location: 33934-34746 bp Ori: KAA5260831.1 Feature: domain Description: DUF1566 Location: 34468-34720 bp Feature: domain Description: DUF1566 Location: 34 4 68-34 720 bp Feature: gene Location: 34892-35272 bp Ori: KAA5260832.1 Feature: domain Description: Avd_like Location: 34919-35225 bp Feature: domain Description: Avd_like Location: 34 919-35225 bp Feature: gene Location: 35287-36708 bp Ori: KAA5260833.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 35659-36364 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 35659-36364 bp Feature: gene Location: 36674-36949 bp Feature: gene Location: 37059-38126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37323-38112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37323-38112 bp Feature: gene Location: 38668-38946 bp Ori: KAA5260835.1 Feature: domain Description: DUF4134 Location: 38731-38929 bp Feature: domain Description: DUF4 134 Location: 38731-38929 bp Feature: gene Location: 39005-39337 bp Ori: KAA5260836.1 Feature: domain Description: DUF4134 Location: 39035-39323 bp Feature: domain Description: DUF4 134 Location: 39035-39323 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, RVT-GII, DUF4134 (pfam13572)

Seq: VWAB01000042.1 Bacteroides faecis strain BIOML-A3 scaffold42_size53941, whole genome shotgun sequence (53941 bp)
Overview 1 RT 1: 26518-29246 bp Neighborhood of RT #1 [26518, 29246] RVT-DGRs Feature: gene Location: 26518-26760 bp Feature: gene Location: 26940-27425 bp Feature: gene Location: 27422-28726 bp Ori: KAA5261302.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 27635-28229 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 27635 -28229 bp Feature: gene Location: 28821-29055 bp Feature: gene Location: 29052-29246 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: VWAB01000009.1 Bacteroides faecis strain BIOML-A3 scaffold9_size113279, whole genome shotgun sequence (113279 bp)
Overview 1 RT 1: 24513-34743 bp Neighborhood of RT #1 [24513, 34743] DUF1566 Avd_like DUF1566 RVT-DGRs Feature: gene Location: 24513-30542 bp Ori: KAA5264437.1 Feature: domain Description: DUF1566 Location: 30225-30531 bp Feature: domain Description: DUF156 6 Location: 30225-30531 bp Feature: gene Location: 30672-31073 bp Ori: KAA5264438.1 Feature: domain Description: Avd_like Location: 30711-31050 bp Feature: domain Description: Avd_like Location: 30711-31050 bp Feature: gene Location: 31086-32507 bp Ori: KAA5264439.1 Feature: domain Description: DUF1566 Location: 31158-31302 bp Feature: domain Description: DUF156 6 Location: 31158-31302 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31491-32232 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31491-32232 bp Feature: gene Location: 32498-32851 bp Feature: gene Location: 32914-34743 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: VWAB01000057.1 Bacteroides faecis strain BIOML-A3 scaffold57_size40586, whole genome shotgun sequence (40586 bp)
Overview 1 RT 1: 11987-16673 bp Neighborhood of RT #1 [11987, 16673] HTH_Hin_like RVT-UG27 Feature: gene Location: 11987-12589 bp Feature: gene Location: 12579-12902 bp Ori: KAA5260482.1 Feature: domain Description: HTH_Hin_like Location: 12630-12732 bp Feature: domain Description: HTH_Hin_like Location: 12630-127 32 bp Feature: gene Location: 12899-14167 bp Ori: KAA5260483.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 13088-13724 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 13088-137 24 bp Feature: gene Location: 15191-15649 bp Feature: gene Location: 15684-16673 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Hin_like (cd00569), RVT-UG27

Seq: VWAB01000157.1 Bacteroides faecis strain BIOML-A3 scaffold157_size2489, whole genome shotgun sequence (2489 bp)
Overview 1 RT 1: 1-2430 bp Neighborhood of RT #1 [1, 2430] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1-76 bp Feature: gene Location: 118-1923 bp Ori: KAA5252929.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 382-1204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38 2-1204 bp Feature: domain Description: Intron_maturas2 Location: 1282-1612 bp Feature: domain Description: Intron_maturas2 Location: 128 2-1612 bp Feature: domain Description: HNHc Note: nucleases Location: 1756-1900 bp Feature: domain Description: HNHc Note: nucleases Location: 1756-1900 bp Feature: gene Location: 1957-2430 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VWAB01000003.1 Bacteroides faecis strain BIOML-A3 scaffold3_size152855, whole genome shotgun sequence (152855 bp)
Overview 1 RT 1: 11189-21668 bp Neighborhood of RT #1 [11189, 22051] PRK13351 Spc7 RVT_N RVT-GII GIIM N6_Mtase COG4646 Feature: gene Location: 11189-13114 bp Ori: KAA5265457.1 Gene: tet(Q) Feature: domain Description: PRK13351 Location: 11192-13046 bp Feature: domain Description: PRK13351 Location: 1119 2-13046 bp Feature: gene Location: 13772-15037 bp Ori: KAA5265539.1 Feature: domain Description: Spc7 Location: 14648-14915 bp Feature: domain Description: Spc7 Location: 14648-149 15 bp Feature: gene Location: 15039-16706 bp Ori: KAA5265458.1 Gene: ltrA Feature: domain Description: RVT_N Location: 15093-15336 bp Feature: domain Description: RVT_N Location: 1509 3-15336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15381-16029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15381-16029 bp Feature: domain Description: GIIM Note: maturase Location: 16083-16314 bp Feature: domain Description: GIIM Note: maturase Location: 16083-16314 bp Feature: gene Location: 16672-16875 bp Feature: gene Location: 17363-22051 bp Ori: KAA5265460.1 Feature: domain Description: N6_Mtase Location: 17675-18278 bp Feature: domain Description: N6_Mtase Location: 17675-18278 bp Feature: domain Description: COG4646 Location: 19607-21668 bp Feature: domain Description: COG4646 Location: 19 607-21668 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13351 (elongation factor G-like protein), Spc7 (smart00787), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )