myRT

myRT report for GCA_008571595.1_ASM857159v1

Download annotations/find similar RTs

Seq: VVZZ01000050.1 Bacteroides faecis strain BIOML-A1 scaffold50_size45086, whole genome shotgun sequence (45086 bp)
Overview 1 RT 1: 19023-24412 bp Neighborhood of RT #1 [19023, 24426] DUF1566 Avd_like RVT-DGRs RVT-GII DUF4134 DUF4134 Feature: gene Location: 19023-19835 bp Ori: KAA5289517.1 Feature: domain Description: DUF1566 Location: 19557-19809 bp Feature: domain Description: DUF1 566 Location: 1 9557-1 9809 bp Feature: gene Location: 19981-20361 bp Ori: KAA5289518.1 Feature: domain Description: Avd_like Location: 20008-20314 bp Feature: domain Description: Avd_like Location: 20008-2031 4 bp Feature: gene Location: 20376-21797 bp Ori: KAA5289519.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 20748-21453 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 20748-21 453 bp Feature: gene Location: 21763-22038 bp Feature: gene Location: 22148-23215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22412-23201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2241 2-23201 bp Feature: gene Location: 23757-24035 bp Ori: KAA5289521.1 Feature: domain Description: DUF4134 Location: 23820-24018 bp Feature: domain Description: DUF41 34 Location: 23820-2401 8 bp Feature: gene Location: 24094-24426 bp Ori: KAA5289522.1 Feature: domain Description: DUF4134 Location: 24124-24412 bp Feature: domain Description: DUF41 34 Location: 241 24-2441 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, RVT-GII, DUF4134 (pfam13572)

Seq: VVZZ01000035.1 Bacteroides faecis strain BIOML-A1 scaffold35_size53989, whole genome shotgun sequence (53989 bp)
Overview 1 RT 1: 2847-15664 bp Neighborhood of RT #1 [2847, 15664] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 KOG1803 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 2847-4643 bp Ori: KAA5291111.1 Feature: domain Description: rpsA Location: 2916-4527 bp Feature: domain Description: rpsA Location: 2 916-452 7 bp Feature: gene Location: 4812-10685 bp Ori: KAA5291112.1 Feature: domain Description: DUF4011 Location: 5976-6486 bp Feature: domain Description: DUF4011 Location: 5976-6486 bp Feature: domain Description: DEXXQc_SF1 Location: 6825-7434 bp Feature: domain Description: DEXXQc_SF1 Location: 682 5-7434 bp Feature: domain Description: DEXXQc_SF1 Location: 8097-9012 bp Feature: domain Description: DEXXQc_SF1 Location: 8097-9012 bp Feature: domain Description: KOG1803 Location: 9147-9525 bp Feature: domain Description: KOG1803 Location: 9147-952 5 bp Feature: domain Description: MTES_1575 Location: 9684-9972 bp Feature: domain Description: MTES_1575 Location: 9684-9972 bp Feature: domain Description: DUF3320 Location: 10203-10323 bp Feature: domain Description: DUF332 0 Location: 102 03-1032 3 bp Feature: gene Location: 10727-11860 bp Ori: KAA5291113.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11051-11597 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11051-11597 bp Feature: gene Location: 12065-14224 bp Feature: gene Location: 15464-15664 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase ), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons

Seq: VVZZ01000194.1 Bacteroides faecis strain BIOML-A1 scaffold194_size2489, whole genome shotgun sequence (2489 bp)
Overview 1 RT 1: 1-2430 bp Neighborhood of RT #1 [1, 2430] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1-76 bp Feature: gene Location: 118-1923 bp Ori: KAA5281416.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 382-1204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 82-1204 bp Feature: domain Description: Intron_maturas2 Location: 1282-1612 bp Feature: domain Description: Intron_maturas2 Location: 1282-1612 bp Feature: domain Description: HNHc Note: nucleases Location: 1756-1900 bp Feature: domain Description: HNHc Note: nucleases Location: 1756-1900 bp Feature: gene Location: 1957-2430 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VVZZ01000063.1 Bacteroides faecis strain BIOML-A1 scaffold63_size37021, whole genome shotgun sequence (37021 bp)
Overview 1 RT 1: 8422-13108 bp Neighborhood of RT #1 [8422, 13108] HTH_Hin_like RVT-UG27 Feature: gene Location: 8422-9024 bp Feature: gene Location: 9014-9337 bp Ori: KAA5287902.1 Feature: domain Description: HTH_Hin_like Location: 9065-9167 bp Feature: domain Description: HTH_Hin_like Location: 9065-9167 bp Feature: gene Location: 9334-10602 bp Ori: KAA5287903.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 9523-10159 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 9523-10159 bp Feature: gene Location: 11626-12084 bp Feature: gene Location: 12119-13108 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Hin_like (cd00569), RVT-UG27

Seq: VVZZ01000193.1 Bacteroides faecis strain BIOML-A1 scaffold193_size2494, whole genome shotgun sequence (2494 bp)
Overview 1 RT 1: 575-2494 bp Neighborhood of RT #1 [575, 2494] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 575-2380 bp Ori: KAA5281418.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 839-1661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 839-1661 bp Feature: domain Description: Intron_maturas2 Location: 1820-2189 bp Feature: domain Description: Intron_maturas2 Location: 1820-2189 bp Feature: domain Description: HNHc Note: nucleases Location: 2213-2354 bp Feature: domain Description: HNHc Note: nucleases Location: 2213-235 4 bp Feature: gene Location: 2373-2494 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VVZZ01000057.1 Bacteroides faecis strain BIOML-A1 scaffold57_size39974, whole genome shotgun sequence (39974 bp)
Overview 1 RT 1: 8708-18927 bp Neighborhood of RT #1 [8708, 18938] DUF1566 RVT-DGRs Avd_like DUF1566 Feature: gene Location: 8708-10537 bp Feature: gene Location: 10600-10953 bp Feature: gene Location: 10944-12365 bp Ori: KAA5288573.1 Feature: domain Description: DUF1566 Location: 11016-11160 bp Feature: domain Description: DUF156 6 Location: 11016 -1116 0 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11349-12090 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11349-12090 bp Feature: gene Location: 12378-12779 bp Ori: KAA5288574.1 Feature: domain Description: Avd_like Location: 12417-12756 bp Feature: domain Description: Avd_like Location: 12417-12756 bp Feature: gene Location: 12909-18938 bp Ori: KAA5288575.1 Feature: domain Description: DUF1566 Location: 18621-18927 bp Feature: domain Description: DUF156 6 Location: 186 21-18927 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), RVT-DGRs, Avd_like (cd16376)

Seq: VVZZ01000195.1 Bacteroides faecis strain BIOML-A1 scaffold195_size2416, whole genome shotgun sequence (2416 bp)
Overview 1 RT 1: 122-1397 bp Neighborhood of RT #1 [122, 1774] RVT_N RVT-GII GIIM Feature: gene Location: 122-1774 bp Ori: KAA5281299.1 Gene: ltrA Feature: domain Description: RVT_N Location: 176-419 bp Feature: domain Description: RVT_N Location: 17 6-419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1112 bp Feature: domain Description: GIIM Note: maturase Location: 1166-1397 bp Feature: domain Description: GIIM Note: maturase Location: 1166-1397 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: VVZZ01000036.1 Bacteroides faecis strain BIOML-A1 scaffold36_size53941, whole genome shotgun sequence (53941 bp)
Overview 1 RT 1: 26518-29246 bp Neighborhood of RT #1 [26518, 29246] RVT-DGRs Feature: gene Location: 26518-26760 bp Feature: gene Location: 26940-27425 bp Feature: gene Location: 27422-28726 bp Ori: KAA5291082.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 27635-28229 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 27635-28 229 bp Feature: gene Location: 28821-29055 bp Feature: gene Location: 29052-29246 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: VVZZ01000120.1 Bacteroides faecis strain BIOML-A1 scaffold120_size12747, whole genome shotgun sequence (12747 bp)
Overview 1 RT 1: 7831-12549 bp Neighborhood of RT #1 [7831, 12548] HTH_XRE S24_LexA-like INTN1_C_like RVT-GII Intron_maturas2 HNHc Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 7831-8595 bp Ori: KAA5284340.1 Feature: domain Description: HTH_XRE Location: 7846-8020 bp Feature: domain Description: HTH_XRE Location: 7846-8020 bp Feature: domain Description: S24_LexA-like Location: 8287-8536 bp Feature: domain Description: S24_LexA-like Location: 8287-8536 bp Feature: gene Location: 8833-9198 bp Ori: KAA5284341.1 Feature: domain Description: INTN1_C_like Location: 8953-9133 bp Feature: domain Description: INTN1_C_like Location: 89 53-9 133 bp Feature: gene Location: 9188-11008 bp Ori: KAA5284342.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9452-10274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9 452-10274 bp Feature: domain Description: Intron_maturas2 Location: 10349-10655 bp Feature: domain Description: Intron_maturas2 Location: 10349 -10655 bp Feature: domain Description: HNHc Note: nucleases Location: 10832-10949 bp Feature: domain Description: HNHc Note: nucleases Location: 10832-109 49 bp Feature: gene Location: 11574-12548 bp Feature: domain Description: Arm-DNA-bind_5 Location: 11601-11853 bp Feature: domain Description: Arm-DNA-bind_5 Location: 11601-11853 bp Feature: domain Description: Phage_int_SAM_5 Location: 11895-12210 bp Feature: domain Description: Phage_int_SAM_5 Location: 1189 5-12210 bp Feature: domain Description: INTN1_C_like Location: 12249-12549 bp Feature: domain Description: INTN1_C_like Location: 12249 -12549 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), S24_LexA-like (cd06529), INTN1_C_like (cd01185), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102)

Seq: VVZZ01000009.1 Bacteroides faecis strain BIOML-A1 scaffold9_size110763, whole genome shotgun sequence (110763 bp)
Overview 1 RT 1: 11189-21668 bp Neighborhood of RT #1 [11189, 22051] PRK13351 Spc7 RVT_N RVT-GII GIIM N6_Mtase COG4646 Feature: gene Location: 11189-13114 bp Ori: KAA5294782.1 Gene: tet(Q) Feature: domain Description: PRK13351 Location: 11192-13046 bp Feature: domain Description: PRK13351 Location: 11192-13046 bp Feature: gene Location: 13772-15037 bp Ori: KAA5294844.1 Feature: domain Description: Spc7 Location: 14648-14915 bp Feature: domain Description: Spc7 Location: 14648-14915 bp Feature: gene Location: 15039-16706 bp Ori: KAA5294783.1 Gene: ltrA Feature: domain Description: RVT_N Location: 15093-15336 bp Feature: domain Description: RVT_N Location: 15093-15336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15381-16029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15381-16029 bp Feature: domain Description: GIIM Note: maturase Location: 16083-16314 bp Feature: domain Description: GIIM Note: maturase Location: 16083-16314 bp Feature: gene Location: 16672-16875 bp Feature: gene Location: 17363-22051 bp Ori: KAA5294785.1 Feature: domain Description: N6_Mtase Location: 17675-18278 bp Feature: domain Description: N6_Mtase Location: 17675-18278 bp Feature: domain Description: COG4646 Location: 19607-21668 bp Feature: domain Description: COG4646 Location: 19607-21668 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13351 (elongation factor G-like protein), Spc7 (smart00787), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )