myRT

myRT report for GCA_008571605.1_ASM857160v1

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Seq: VVZY01000134.1 Bacteroides eggerthii strain BIOML-A2 scaffold134_size5955, whole genome shotgun sequence (5955 bp)
Overview 1 RT 1: 2-5904 bp Neighborhood of RT #1 [2, 5954] COG4646 COG4646 matK RVT-GII Intron_maturas2 COG4646 HELICc Feature: gene Location: 2-1894 bp Feature: domain Description: COG4646 Location: 734-860 bp Feature: domain Description: COG4646 Location: 734-860 bp Feature: domain Description: COG4646 Location: 986-1883 bp Feature: domain Description: COG4646 Location: 986-1 883 bp Feature: gene Location: 2447-4249 bp Feature: domain Description: matK Location: 2516-2603 bp Feature: domain Description: matK Location: 251 6-2603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2711-3533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271 1 -3533 bp Feature: domain Description: Intron_maturas2 Location: 3683-3917 bp Feature: domain Description: Intron_maturas2 Location: 3683-391 7 bp Feature: gene Location: 4236-5954 bp Feature: domain Description: COG4646 Location: 4350-5490 bp Feature: domain Description: COG4646 Location: 4350-5490 bp Feature: domain Description: HELICc Location: 5514-5904 bp Feature: domain Description: HELICc Location: 551 4-5904 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4646 (Adenine-specific DNA methylase, N12 class ), matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348), HELICc (smart00490)

Seq: VVZY01000177.1 Bacteroides eggerthii strain BIOML-A2 scaffold177_size2420, whole genome shotgun sequence (2420 bp)
Overview 1 RT 1: 347-1922 bp Neighborhood of RT #1 [347, 2299] RVT_N RVT-GII GIIM Feature: gene Location: 347-481 bp Feature: gene Location: 647-2299 bp Feature: RT Description: RVT_N Location: 701-944 bp Feature: RT Description: RVT_N Location: 701-944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 989-1637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 989-1637 bp Feature: domain Description: GIIM Note: maturase Location: 1691-1922 bp Feature: domain Description: GIIM Note: maturase Location: 1691-192 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: VVZY01000020.1 Bacteroides eggerthii strain BIOML-A2 scaffold20_size62264, whole genome shotgun sequence (62264 bp)
Overview 1 RT 1: 56714-61726 bp Neighborhood of RT #1 [56714, 62016] Prophage_tail Prophage_tail RVT-DGRs Feature: gene Location: 56714-60319 bp Feature: domain Description: Prophage_tail Location: 56990-57269 bp Feature: domain Description: Prophage_tail Location: 56990-57269 bp Feature: domain Description: Prophage_tail Location: 57914-58157 bp Feature: domain Description: Prophage_tail Location: 57914-58157 bp Feature: gene Location: 60325-60732 bp Feature: gene Location: 60844-62016 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61060-61726 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61060-61726 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Prophage_tail (pfam06605), RVT-DGRs

Seq: VVZY01000026.1 Bacteroides eggerthii strain BIOML-A2 scaffold26_size48314, whole genome shotgun sequence (48314 bp)
Overview 1 RT 1: 23759-28477 bp Neighborhood of RT #1 [23759, 28477] Dam RVT-DGRs Feature: gene Location: 23759-24601 bp Feature: domain Description: Dam Location: 23762-24530 bp Feature: domain Description: Dam Location: 23762-24 530 bp Feature: gene Location: 24788-25198 bp Feature: gene Location: 25231-26535 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 25420-26080 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 254 20-26080 bp Feature: gene Location: 26507-26860 bp Feature: gene Location: 27041-28477 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dam (pfam05869), RVT-DGRs

Seq: VVZY01000034.1 Bacteroides eggerthii strain BIOML-A2 scaffold34_size39945, whole genome shotgun sequence (39945 bp)
Overview 1 RT 1: 30001-35310 bp Neighborhood of RT #1 [30001, 39431] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 30001-30243 bp Feature: gene Location: 30422-30907 bp Feature: gene Location: 30904-32274 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31183-31858 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31183-3185 8 bp Feature: gene Location: 32312-32515 bp Feature: gene Location: 32712-39431 bp Feature: domain Description: Laminin_G_3 Location: 34155-34233 bp Feature: domain Description: Laminin_G_3 Location: 3415 5 -34233 bp Feature: domain Description: Laminin_G_3 Location: 34884-35310 bp Feature: domain Description: Laminin_G_3 Location: 34884-35 310 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: VVZY01000003.1 Bacteroides eggerthii strain BIOML-A2 scaffold3_size127613, whole genome shotgun sequence (127613 bp)
Overview 1 RT 1: 9053-12432 bp Neighborhood of RT #1 [9053, 12432] RVT-DGRs Feature: gene Location: 9053-9637 bp Feature: gene Location: 9585-9815 bp Feature: gene Location: 9781-10596 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 10099-10435 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 10099-10435 bp Feature: gene Location: 10880-11083 bp Feature: gene Location: 11113-12432 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: VVZY01000048.1 Bacteroides eggerthii strain BIOML-A2 scaffold48_size24000, whole genome shotgun sequence (24000 bp)
Overview 1 RT 1: 14221-18670 bp Neighborhood of RT #1 [14221, 18708] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-GII Intron_maturas2 COG3943 HTH_17 Feature: gene Location: 14221-15390 bp Feature: domain Description: Arm-DNA-bind_5 Location: 14251-14506 bp Feature: domain Description: Arm-DNA-bind_5 Location: 14251-14506 bp Feature: domain Description: Phage_int_SAM_5 Location: 14545-14866 bp Feature: domain Description: Phage_int_SAM_5 Location: 14545-14866 bp Feature: domain Description: INTN1_C_like Location: 14905-15373 bp Feature: domain Description: INTN1_C_like Location: 14905-1537 3 bp Feature: gene Location: 15579-15707 bp Feature: gene Location: 15941-17749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16205-17027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16205-17 027 bp Feature: domain Description: Intron_maturas2 Location: 17153-17408 bp Feature: domain Description: Intron_maturas2 Location: 17 153-17 408 bp Feature: gene Location: 17963-18325 bp Feature: domain Description: COG3943 Location: 18002-18251 bp Feature: domain Description: COG3943 Location: 18002-18251 bp Feature: gene Location: 18403-18708 bp Feature: domain Description: HTH_17 Location: 18541-18670 bp Feature: domain Description: HTH_17 Location: 18541-1867 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-GII, Intron_maturas2 (pfam01348), COG3943 (Uncharacterized conserved protein ), HTH_17 (pfam12728)

Seq: VVZY01000056.1 Bacteroides eggerthii strain BIOML-A2 scaffold56_size20681, whole genome shotgun sequence (20681 bp)
Overview 1 RT 1: 3068-5888 bp Neighborhood of RT #1 [3068, 5888] RVT-DGRs Feature: gene Location: 3068-3301 bp Feature: gene Location: 3323-3580 bp Feature: gene Location: 3677-4978 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3887-4565 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 38 8 7-4565 bp Feature: gene Location: 5011-5460 bp Feature: gene Location: 5646-5888 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: VVZY01000095.1 Bacteroides eggerthii strain BIOML-A2 scaffold95_size12201, whole genome shotgun sequence (12201 bp)
Overview 1 RT 1: 3-5102 bp Neighborhood of RT #1 [3, 5116] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 3-227 bp Feature: gene Location: 242-1936 bp Feature: domain Description: Bac_Flav_CT_G Location: 362-1928 bp Feature: domain Description: Bac_Flav_CT_G Location: 362-19 28 bp Feature: gene Location: 1933-3594 bp Feature: RT Description: RVT_N Location: 1987-2230 bp Feature: RT Description: RVT_N Location: 19 87-2230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2275-2923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2275-29 23 bp Feature: domain Description: GIIM Note: maturase Location: 2977-3208 bp Feature: domain Description: GIIM Note: maturase Location: 29 77-3208 bp Feature: gene Location: 3676-4056 bp Feature: gene Location: 4178-5116 bp Feature: domain Description: Bac_Flav_CT_G Location: 4181-5102 bp Feature: domain Description: Bac_Flav_CT_G Location: 4181-5102 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Bac_Flav_CT_G (TIGR03783)