myRT

myRT report for GCA_008571615.1_ASM857161v1

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Seq: VWAE01000108.1 Bacteroides faecis strain BIOML-A6 scaffold111_size10751, whole genome shotgun sequence (10751 bp)
Overview 1 RT 1: 4062-10556 bp Neighborhood of RT #1 [4062, 10556] DUF4372 TraG-D_C RVT-GII Intron_maturas2 HNHc RVT_N RVT-GII GIIM Feature: gene Location: 4062-4334 bp Feature: domain Description: DUF4372 Location: 4068-4239 bp Feature: domain Description: DUF4372 Location: 4068-4239 bp Feature: gene Location: 4727-5743 bp Feature: domain Description: TraG-D_C Location: 5105-5438 bp Feature: domain Description: TraG-D_C Location: 51 05-5438 bp Feature: gene Location: 5707-7524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5974-6796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5974-6796 bp Feature: domain Description: Intron_maturas2 Location: 6901-7174 bp Feature: domain Description: Intron_maturas2 Location: 6901 -71 74 bp Feature: domain Description: HNHc Note: nucleases Location: 7345-7498 bp Feature: domain Description: HNHc Note: nucleases Location: 7345-7498 bp Feature: gene Location: 8086-8448 bp Feature: gene Location: 8453-10105 bp Feature: RT Description: RVT_N Location: 8507-8750 bp Feature: RT Description: RVT_N Location: 8507-8750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8795-9443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8795-9443 bp Feature: domain Description: GIIM Note: maturase Location: 9497-9728 bp Feature: domain Description: GIIM Note: maturase Location: 9497-9728 bp Feature: gene Location: 10187-10360 bp Feature: gene Location: 10422-10556 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4372 (pfam14294), TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), RVT_N (pfam13655), GIIM (pfam08388)

Seq: VWAE01000125.1 Bacteroides faecis strain BIOML-A6 scaffold150_size8250, whole genome shotgun sequence (8250 bp)
Overview 1 RT 1: 254-3694 bp Neighborhood of RT #1 [254, 3708] RVT-GII Intron_maturas2 HNHc TraG-D_C Imm17 Feature: gene Location: 254-481 bp Feature: gene Location: 487-2304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 754-1576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 754-1576 bp Feature: domain Description: Intron_maturas2 Location: 1720-1954 bp Feature: domain Description: Intron_maturas2 Location: 172 0-1954 bp Feature: domain Description: HNHc Note: nucleases Location: 2125-2275 bp Feature: domain Description: HNHc Note: nucleases Location: 2 12 5-2 2 75 bp Feature: gene Location: 2268-3272 bp Feature: domain Description: TraG-D_C Location: 2646-2979 bp Feature: domain Description: TraG-D_C Location: 2 646-2 979 bp Feature: gene Location: 3427-3708 bp Feature: domain Description: Imm17 Location: 3517-3694 bp Feature: domain Description: Imm17 Location: 3517-3694 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), Imm17 (pfam15562), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VWAE01000126.1 Bacteroides faecis strain BIOML-A6 scaffold154_size5933, whole genome shotgun sequence (5933 bp)
Overview 1 RT 1: 107-2691 bp Neighborhood of RT #1 [107, 3356] RVT-DGRs Phage_Mu_F Feature: gene Location: 107-1408 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 317-995 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 17-995 bp Feature: gene Location: 1787-2020 bp Feature: gene Location: 2130-3356 bp Feature: domain Description: Phage_Mu_F Location: 2415-2691 bp Feature: domain Description: Phage_Mu_F Location: 2415-2691 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_Mu_F (pfam04233)

Seq: VWAE01000017.1 Bacteroides faecis strain BIOML-A6 scaffold17_size94255, whole genome shotgun sequence (94255 bp)
Overview 1 RT 1: 81953-89051 bp Neighborhood of RT #1 [81953, 89051] HTH_18 RVT-GII Intron_maturas2 HNHc INTN1_C_like Arm-DNA-bind_5 RVT-GII Feature: gene Location: 81953-83092 bp Feature: domain Description: HTH_18 Location: 82823-83063 bp Feature: domain Description: HTH_18 Location: 82823-83063 bp Feature: gene Location: 83217-83453 bp Feature: gene Location: 83923-85434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83965-84709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83965-84 709 bp Feature: domain Description: Intron_maturas2 Location: 84790-85087 bp Feature: domain Description: Intron_maturas2 Location: 84 790-85087 bp Feature: domain Description: HNHc Note: nucleases Location: 85261-85366 bp Feature: domain Description: HNHc Note: nucleases Location: 85261-85366 bp Feature: gene Location: 85848-86252 bp Feature: domain Description: INTN1_C_like Location: 85920-86229 bp Feature: domain Description: INTN1_C_like Location: 85920-86229 bp Feature: gene Location: 86384-86869 bp Feature: domain Description: Arm-DNA-bind_5 Location: 86414-86660 bp Feature: domain Description: Arm-DNA-bind_5 Location: 864 14 -86660 bp Feature: gene Location: 87377-88246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87662-88121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87662-88121 bp Feature: gene Location: 88283-88672 bp Feature: gene Location: 88884-89051 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_18 (pfam12833), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), INTN1_C_like (cd01185), Arm-DNA-bind_5 (pfam17293)

Seq: VWAE01000022.1 Bacteroides faecis strain BIOML-A6 scaffold22_size87154, whole genome shotgun sequence (87154 bp)
Overview 1 RT 1: 1480-5604 bp Neighborhood of RT #1 [1480, 5633] DUF4141 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_J Feature: gene Location: 1480-1707 bp Feature: domain Description: DUF4141 Location: 1495-1648 bp Feature: domain Description: DUF4141 Location: 1495 -1648 bp Feature: gene Location: 1747-1908 bp Feature: gene Location: 2228-4063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2522-3344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 22-3344 bp Feature: domain Description: Intron_maturas2 Location: 3503-3872 bp Feature: domain Description: Intron_maturas2 Location: 35 03-3872 bp Feature: domain Description: HNHc Note: nucleases Location: 3896-4037 bp Feature: domain Description: HNHc Note: nucleases Location: 3896-4037 bp Feature: gene Location: 4056-4592 bp Feature: gene Location: 4620-5633 bp Feature: domain Description: Bac_Flav_CT_J Location: 4641-5604 bp Feature: domain Description: Bac_Flav_CT_J Location: 4641-5 604 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_J (TIGR03782)

Seq: VWAE01000024.1 Bacteroides faecis strain BIOML-A6 scaffold24_size86258, whole genome shotgun sequence (86258 bp)
Overview 1 RT 1: 30587-35895 bp Neighborhood of RT #1 [30587, 40016] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 30587-30829 bp Feature: gene Location: 31008-31493 bp Feature: gene Location: 31490-32860 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31769-32444 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3176 9-32444 bp Feature: gene Location: 32883-33101 bp Feature: gene Location: 33297-40016 bp Feature: domain Description: Laminin_G_3 Location: 34740-34818 bp Feature: domain Description: Laminin_G_3 Location: 34740-34818 bp Feature: domain Description: Laminin_G_3 Location: 35469-35895 bp Feature: domain Description: Laminin_G_3 Location: 3546 9-35895 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: VWAE01000028.1 Bacteroides faecis strain BIOML-A6 scaffold28_size77348, whole genome shotgun sequence (77348 bp)
Overview 1 RT 1: 26217-39034 bp Neighborhood of RT #1 [26217, 39034] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 KOG1803 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 26217-28013 bp Feature: domain Description: rpsA Location: 26286-27897 bp Feature: domain Description: rpsA Location: 26286-27 897 bp Feature: gene Location: 28182-34055 bp Feature: domain Description: DUF4011 Location: 29346-29856 bp Feature: domain Description: DUF4011 Location: 29346-29856 bp Feature: domain Description: DEXXQc_SF1 Location: 30195-30804 bp Feature: domain Description: DEXXQc_SF1 Location: 30195-30804 bp Feature: domain Description: DEXXQc_SF1 Location: 31467-32382 bp Feature: domain Description: DEXXQc_SF1 Location: 31467 -32382 bp Feature: domain Description: KOG1803 Location: 32517-32895 bp Feature: domain Description: KOG1803 Location: 32517 -32895 bp Feature: domain Description: MTES_1575 Location: 33054-33342 bp Feature: domain Description: MTES_157 5 Location: 33054-33342 bp Feature: domain Description: DUF3320 Location: 33573-33693 bp Feature: domain Description: DUF3320 Location: 3357 3-33693 bp Feature: gene Location: 34097-35230 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34421-34967 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34421-34967 bp Feature: gene Location: 35435-37621 bp Feature: gene Location: 38525-39034 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase ), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons

Seq: VWAE01000168.1 Bacteroides faecis strain BIOML-A6 scaffold337_size3355, whole genome shotgun sequence (3355 bp)
Overview 1 RT 1: 1-3075 bp Neighborhood of RT #1 [1, 3116] DUF4134 RVT_N RVT-GII GIIM DUF4134 DUF4133 Feature: gene Location: 1-261 bp Feature: domain Description: DUF4134 Location: 70-247 bp Feature: domain Description: DUF4134 Location: 70-247 bp Feature: gene Location: 386-595 bp Feature: gene Location: 877-2532 bp Feature: RT Description: RVT_N Location: 934-1171 bp Feature: RT Description: RVT_N Location: 934-1171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1222-1870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1222-18 70 bp Feature: domain Description: GIIM Note: maturase Location: 1927-2158 bp Feature: domain Description: GIIM Note: maturase Location: 1927-2158 bp Feature: gene Location: 2593-2769 bp Feature: domain Description: DUF4134 Location: 2674-2764 bp Feature: domain Description: DUF4134 Location: 2674-2764 bp Feature: gene Location: 2793-3116 bp Feature: domain Description: DUF4133 Location: 2808-3075 bp Feature: domain Description: DUF4133 Location: 28 08 -3075 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), DUF4133 (pfam13571), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: VWAE01000172.1 Bacteroides faecis strain BIOML-A6 scaffold373_size3155, whole genome shotgun sequence (3155 bp)
Overview 1 RT 1: 1-2857 bp Neighborhood of RT #1 [1, 2857] RVT-DGRs Feature: gene Location: 1-564 bp Feature: gene Location: 640-1941 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 850-1528 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 850-1528 bp Feature: gene Location: 1938-2423 bp Feature: gene Location: 2615-2857 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: VWAE01000048.1 Bacteroides faecis strain BIOML-A6 scaffold48_size44840, whole genome shotgun sequence (44840 bp)
Overview 1 RT 1: 1-3202 bp Neighborhood of RT #1 [1, 3228] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 1-147 bp Feature: gene Location: 213-488 bp Feature: gene Location: 454-1875 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 826-1555 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 826-1555 bp Feature: gene Location: 1890-2270 bp Feature: domain Description: Avd_like Location: 1917-2223 bp Feature: domain Description: Avd_like Location: 1917-2223 bp Feature: gene Location: 2416-3228 bp Feature: domain Description: DUF1566 Location: 2950-3202 bp Feature: domain Description: DUF1566 Location: 2950-3202 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), DUF1566 (pfam07603), RVT-DGRs