myRT

myRT report for GCA_008571655.1_ASM857165v1

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Seq: VWAD01000019.1 Bacteroides faecis strain BIOML-A5 scaffold19_size105962, whole genome shotgun sequence (105852 bp)
Overview 1 RT 1: 81953-89051 bp 2 RT 2: 102518-105354 bp Neighborhood of RT #1 [81953, 89051] HTH_18 RVT-GII Intron_maturas2 HNHc INTN1_C_like Arm-DNA-bind_5 RVT-GII Neighborhood of RT #2 [102518, 105731] YWFCY RVT_N RVT-GII GIIM Feature: gene Location: 81953-83092 bp Feature: domain Description: HTH_18 Location: 82823-83063 bp Feature: domain Description: HTH_1 8 Location: 82823-83063 bp Feature: gene Location: 83217-83453 bp Feature: gene Location: 83923-85434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83965-84709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83965-84709 bp Feature: domain Description: Intron_maturas2 Location: 84790-85087 bp Feature: domain Description: Intron_maturas2 Location: 84790-85087 bp Feature: domain Description: HNHc Note: nucleases Location: 85261-85366 bp Feature: domain Description: HNHc Note: nucleases Location: 85261 -85366 bp Feature: gene Location: 85848-86252 bp Feature: domain Description: INTN1_C_like Location: 85920-86229 bp Feature: domain Description: INTN1 _C_like Location: 85920-86229 bp Feature: gene Location: 86384-86869 bp Feature: domain Description: Arm-DNA-bind_5 Location: 86414-86660 bp Feature: domain Description: Arm-DNA-bind_5 Location: 8641 4-86660 bp Feature: gene Location: 87377-88246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87662-88121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87662-881 21 bp Feature: gene Location: 88283-88672 bp Feature: gene Location: 88884-89051 bp Feature: gene Location: 102518-102793 bp Feature: domain Description: YWFCY Location: 102524-102701 bp Feature: domain Description: YWFCY Location: 1 02524-1 02701 bp Feature: gene Location: 103010-103441 bp Feature: gene Location: 104079-105731 bp Feature: RT Description: RVT_N Location: 104133-104376 bp Feature: RT Description: RVT_N Location: 1 041 33-1 04376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104421-105069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 04421 -1 05069 bp Feature: domain Description: GIIM Note: maturase Location: 105123-105354 bp Feature: domain Description: GIIM Note: maturase Location: 1 051 23-1 05354 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_18 (pfam12833), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), INTN1_C_like (cd01185), Arm-DNA-bind_5 (pfam17293), YWFCY (pfam14293), RVT_N (pfam13655), GIIM (pfam08388)

Seq: VWAD01000022.1 Bacteroides faecis strain BIOML-A5 scaffold22_size87249, whole genome shotgun sequence (87249 bp)
Overview 1 RT 1: 31578-36886 bp Neighborhood of RT #1 [31578, 41007] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 31578-31820 bp Feature: gene Location: 31999-32484 bp Feature: gene Location: 32481-33851 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32760-33435 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32 760-33435 bp Feature: gene Location: 33874-34092 bp Feature: gene Location: 34288-41007 bp Feature: domain Description: Laminin_G_3 Location: 35731-35809 bp Feature: domain Description: Laminin_G_3 Location: 35731-35809 bp Feature: domain Description: Laminin_G_3 Location: 36460-36886 bp Feature: domain Description: Laminin_G_3 Location: 36460-36886 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: VWAD01000023.1 Bacteroides faecis strain BIOML-A5 scaffold23_size87154, whole genome shotgun sequence (87154 bp)
Overview 1 RT 1: 81522-85616 bp Neighborhood of RT #1 [81522, 85675] Bac_Flav_CT_J RVT-GII Intron_maturas2 HNHc DUF4141 Feature: gene Location: 81522-82535 bp Feature: domain Description: Bac_Flav_CT_J Location: 81543-82506 bp Feature: domain Description: Bac_Flav_CT_J Location: 81543 -82506 bp Feature: gene Location: 82563-83099 bp Feature: gene Location: 83092-84927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83386-84208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83 3 86-84208 bp Feature: domain Description: Intron_maturas2 Location: 84367-84736 bp Feature: domain Description: Intron_maturas2 Location: 843 67-8473 6 bp Feature: domain Description: HNHc Note: nucleases Location: 84760-84901 bp Feature: domain Description: HNHc Note: nucleases Location: 84760-84901 bp Feature: gene Location: 85247-85408 bp Feature: gene Location: 85448-85675 bp Feature: domain Description: DUF4141 Location: 85463-85616 bp Feature: domain Description: DUF4141 Location: 85463 -85616 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_J (TIGR03782), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605)

Seq: VWAD01000038.1 Bacteroides faecis strain BIOML-A5 scaffold38_size52317, whole genome shotgun sequence (52317 bp)
Overview 1 RT 1: 1-3202 bp Neighborhood of RT #1 [1, 3228] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 1-147 bp Feature: gene Location: 213-488 bp Feature: gene Location: 454-1875 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 826-1555 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 826-1555 bp Feature: gene Location: 1890-2270 bp Feature: domain Description: Avd_like Location: 1917-2223 bp Feature: domain Description: Avd_like Location: 1917-2223 bp Feature: gene Location: 2416-3228 bp Feature: domain Description: DUF1566 Location: 2950-3202 bp Feature: domain Description: DUF1566 Location: 2950-3202 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), DUF1566 (pfam07603), RVT-DGRs

Seq: VWAD01000080.1 Bacteroides faecis strain BIOML-A5 scaffold80_size8688, whole genome shotgun sequence (8688 bp)
Overview 1 RT 1: 4635-8686 bp Neighborhood of RT #1 [4635, 8686] TraG-D_C RVT-GII Intron_maturas2 HNHc Feature: gene Location: 4635-4946 bp Feature: gene Location: 5001-6023 bp Feature: domain Description: TraG-D_C Location: 5379-5712 bp Feature: domain Description: TraG-D_C Location: 5 379-5 712 bp Feature: gene Location: 5987-7804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6254-7076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 625 4-7076 bp Feature: domain Description: Intron_maturas2 Location: 7181-7454 bp Feature: domain Description: Intron_maturas2 Location: 7181-745 4 bp Feature: domain Description: HNHc Note: nucleases Location: 7625-7778 bp Feature: domain Description: HNHc Note: nucleases Location: 7625 -7778 bp Feature: gene Location: 8366-8686 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VWAD01000086.1 Bacteroides faecis strain BIOML-A5 scaffold86_size6529, whole genome shotgun sequence (6529 bp)
Overview 1 RT 1: 3-4057 bp Neighborhood of RT #1 [3, 4071] RVT-GII Intron_maturas2 HNHc TraG-D_C Imm17 Feature: gene Location: 3-323 bp Feature: gene Location: 617-844 bp Feature: gene Location: 850-2667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1117-1939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1117-1939 bp Feature: domain Description: Intron_maturas2 Location: 2083-2317 bp Feature: domain Description: Intron_maturas2 Location: 2083-2317 bp Feature: domain Description: HNHc Note: nucleases Location: 2488-2638 bp Feature: domain Description: HNHc Note: nucleases Location: 2488-26 38 bp Feature: gene Location: 2631-3635 bp Feature: domain Description: TraG-D_C Location: 3009-3342 bp Feature: domain Description: TraG-D_C Location: 3009-3342 bp Feature: gene Location: 3790-4071 bp Feature: domain Description: Imm17 Location: 3880-4057 bp Feature: domain Description: Imm17 Location: 3880-4057 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), Imm17 (pfam15562), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VWAD01000008.1 Bacteroides faecis strain BIOML-A5 scaffold8_size173443, whole genome shotgun sequence (173443 bp)
Overview 1 RT 1: 38315-51016 bp Neighborhood of RT #1 [38315, 51132] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 KOG1803 MTES_1575 DUF3320 rpsA Feature: gene Location: 38315-38824 bp Feature: gene Location: 39728-41914 bp Feature: gene Location: 42119-43252 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42443-42989 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42443-42989 bp Feature: gene Location: 43294-49167 bp Feature: domain Description: DUF4011 Location: 44458-44968 bp Feature: domain Description: DUF4011 Location: 44458-44968 bp Feature: domain Description: DEXXQc_SF1 Location: 45307-45916 bp Feature: domain Description: DEXXQc_SF1 Location: 45307 -45916 bp Feature: domain Description: DEXXQc_SF1 Location: 46579-47494 bp Feature: domain Description: DEXXQc_SF1 Location: 4657 9-47 494 bp Feature: domain Description: KOG1803 Location: 47629-48007 bp Feature: domain Description: KOG1803 Location: 47 629-48007 bp Feature: domain Description: MTES_1575 Location: 48166-48454 bp Feature: domain Description: MTES_157 5 Location: 48166-48454 bp Feature: domain Description: DUF3320 Location: 48685-48805 bp Feature: domain Description: DUF3320 Location: 48685-48805 bp Feature: gene Location: 49336-51132 bp Feature: domain Description: rpsA Location: 49405-51016 bp Feature: domain Description: rpsA Location: 49405-51016 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase ), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)