myRT

myRT report for GCA_008571715.1_ASM857171v1

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Seq: VVZT01000041.1 Bacteroides dorei strain BIOML-A23 scaffold41_size13720, whole genome shotgun sequence (13720 bp)
Overview 1 RT 1: 512-3774 bp Neighborhood of RT #1 [512, 3774] RVT_N RVT-GII GIIM Feature: gene Location: 512-715 bp Feature: gene Location: 681-2348 bp Ori: KAA5305144.1 Gene: ltrA Feature: domain Description: RVT_N Location: 735-978 bp Feature: domain Description: RVT_N Location: 735-978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1023-1671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 023-1 671 bp Feature: domain Description: GIIM Note: maturase Location: 1725-1956 bp Feature: domain Description: GIIM Note: maturase Location: 1 725-1 956 bp Feature: gene Location: 2332-3435 bp Feature: gene Location: 3568-3774 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: VVZT01000005.1 Bacteroides dorei strain BIOML-A23 scaffold5_size232625, whole genome shotgun sequence (232625 bp)
Overview 1 RT 1: 21158-28548 bp Neighborhood of RT #1 [21158, 28559] dnaG RVT-UG24 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like HTH_17 Feature: gene Location: 21158-22192 bp Ori: KAA5313005.1 Feature: domain Description: dnaG Location: 21245-22148 bp Feature: domain Description: dnaG Location: 2 12 45-2 2 148 bp Feature: gene Location: 22199-22939 bp Feature: gene Location: 22941-26378 bp Ori: KAA5313007.1 Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 23451-23916 bp Feature: RT Description: RVT-UG2 4 Note: UG2 4 RT Location: 2 3451-2 3916 bp Feature: gene Location: 26815-28020 bp Ori: KAA5313008.1 Feature: domain Description: Arm-DNA-bind_5 Location: 26848-27064 bp Feature: domain Description: Arm-DNA-bind_5 Location: 2 6848-2 7064 bp Feature: domain Description: Phage_int_SAM_5 Location: 27202-27430 bp Feature: domain Description: Phage_int_SAM_5 Location: 2 72 02 -2 7430 bp Feature: domain Description: INTN1_C_like Location: 27502-28006 bp Feature: domain Description: INTN1_C_like Location: 2 7502 -2 8006 bp Feature: gene Location: 28281-28559 bp Ori: KAA5313009.1 Feature: domain Description: HTH_17 Location: 28401-28548 bp Feature: domain Description: HTH_17 Location: 2 8401-2 8548 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), RVT-UG24, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), HTH_17 (pfam12728)

Seq: VVZT01000007.1 Bacteroides dorei strain BIOML-A23 scaffold7_size214769, whole genome shotgun sequence (214769 bp)
Overview 1 RT 1: 115774-125168 bp 2 RT 2: 135751-142826 bp Neighborhood of RT #1 [115774, 125374] RVT-GII GIIM HTH_17 HTH_17 HTH_17 HTH_17 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like COG3943 RVT-UG2 HTH_17 DUF3987 Neighborhood of RT #2 [135751, 142861] COG0610 COG0610 HTH_XRE RVT_N RVT-GII GIIM SMODS SLATT_4 Feature: gene Location: 115774-115989 bp Feature: gene Location: 116016-116099 bp Feature: gene Location: 116096-117544 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116225-116873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116225-116873 bp Feature: domain Description: GIIM Note: maturase Location: 116924-117158 bp Feature: domain Description: GIIM Note: maturase Location: 116924-117158 bp Feature: gene Location: 117817-118728 bp Ori: KAA5312234.1 Feature: domain Description: HTH_17 Location: 118030-118180 bp Feature: domain Description: HTH_17 Location: 11803 0-118180 bp Feature: domain Description: HTH_17 Location: 118228-118375 bp Feature: domain Description: HTH_17 Location: 118228-1183 75 bp Feature: domain Description: HTH_17 Location: 118402-118531 bp Feature: domain Description: HTH_17 Location: 118402-11853 1 bp Feature: domain Description: HTH_17 Location: 118570-118711 bp Feature: domain Description: HTH_17 Location: 118570-118711 bp Feature: gene Location: 118813-119919 bp Ori: KAA5312235.1 Feature: domain Description: Arm-DNA-bind_5 Location: 118837-119044 bp Feature: domain Description: Arm-DNA-bind_5 Location: 11883 7-119044 bp Feature: domain Description: Phage_int_SAM_5 Location: 119098-119368 bp Feature: domain Description: Phage_int_SAM_5 Location: 119098-1193 68 bp Feature: domain Description: INTN1_C_like Location: 119428-119884 bp Feature: domain Description: INTN1_C_like Location: 119428-119884 bp Feature: gene Location: 119929-120294 bp Ori: KAA5312236.1 Feature: domain Description: COG3943 Location: 119971-120226 bp Feature: domain Description: COG3 943 Location: 119971-120226 bp Feature: gene Location: 120559-121446 bp Feature: gene Location: 121458-123041 bp Ori: KAA5312238.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 121695-122655 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 121695-122655 bp Feature: gene Location: 123621-123986 bp Ori: KAA5312239.1 Feature: domain Description: HTH_17 Location: 123756-123894 bp Feature: domain Description: HTH_17 Location: 123 756-123 894 bp Feature: gene Location: 123998-125374 bp Ori: KAA5312240.1 Feature: domain Description: DUF3987 Location: 124148-125168 bp Feature: domain Description: DUF3 987 Location: 124148-125168 bp Feature: gene Location: 135751-138981 bp Ori: KAA5312251.1 Feature: domain Description: COG0610 Location: 135769-136294 bp Feature: domain Description: COG0610 Location: 13 5769-13 6294 bp Feature: domain Description: COG0610 Location: 136540-138574 bp Feature: domain Description: COG0610 Location: 13 6540-13 8574 bp Feature: gene Location: 138983-139186 bp Ori: KAA5312252.1 Feature: domain Description: HTH_XRE Location: 138995-139163 bp Feature: domain Description: HTH_XRE Location: 13 8995-13 9163 bp Feature: gene Location: 139304-140851 bp Ori: KAA5312253.1 Gene: ltrA Feature: domain Description: RVT_N Location: 139373-139616 bp Feature: domain Description: RVT_N Location: 13 93 73 -13 9616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139661-140306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 9661-1403 06 bp Feature: domain Description: GIIM Note: maturase Location: 140360-140594 bp Feature: domain Description: GIIM Note: maturase Location: 1403 60-140594 bp Feature: gene Location: 141486-142295 bp Ori: KAA5312254.1 Feature: domain Description: SMODS Location: 141519-141984 bp Feature: domain Description: SMODS Location: 141519-141984 bp Feature: gene Location: 142301-142861 bp Ori: KAA5312255.1 Feature: domain Description: SLATT_4 Location: 142328-142826 bp Feature: domain Description: SLATT_4 Location: 1423 28-142826 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_17 (pfam12728), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), COG3943 (Uncharacterized conserved protein ), RVT-UG2, DUF3987 (pfam13148), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases )
HTH_XRE (smart00530), RVT_N (pfam13655), SMODS (pfam18144), SLATT_4 (pfam18186)

Seq: VVZT01000001.1 Bacteroides dorei strain BIOML-A23 scaffold1_size503478, whole genome shotgun sequence (503551 bp)
Overview 1 RT 1: 10308-14814 bp Neighborhood of RT #1 [10308, 14843] DUF3876 DUF4141 RVT-GII Intron_maturas2 HNHc SesA Bac_Flav_CT_J Feature: gene Location: 10308-10688 bp Ori: KAA5314571.1 Feature: domain Description: DUF3876 Location: 10392-10653 bp Feature: domain Description: DUF3876 Location: 10392-10653 bp Feature: gene Location: 10712-10891 bp Ori: KAA5314572.1 Feature: domain Description: DUF4141 Location: 10724-10877 bp Feature: domain Description: DUF4 14 1 Location: 10724 -10877 bp Feature: gene Location: 11450-13258 bp Ori: KAA5314573.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11714-12536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11714 -12536 bp Feature: domain Description: Intron_maturas2 Location: 12632-12971 bp Feature: domain Description: Intron_maturas2 Location: 12632-12971 bp Feature: domain Description: HNHc Note: nucleases Location: 13079-13232 bp Feature: domain Description: HNHc Note: nucleases Location: 13079-13232 bp Feature: gene Location: 13245-13835 bp Ori: KAA5314574.1 Feature: domain Description: SesA Location: 13380-13710 bp Feature: domain Description: SesA Location: 13380-13710 bp Feature: gene Location: 13839-14843 bp Ori: KAA5314575.1 Gene: traJ Feature: domain Description: Bac_Flav_CT_J Location: 13845-14814 bp Feature: domain Description: Bac_Flav_CT_J Location: 1384 5-14 814 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), DUF4141 (pfam13605), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), SesA (pfam17107), Bac_Flav_CT_J (TIGR03782)