myRT

myRT report for GCA_008571725.1_ASM857172v1

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Seq: VVZU01000051.1 Bacteroides dorei strain BIOML-A24 scaffold51_size2466, whole genome shotgun sequence (2466 bp)
Overview 1 RT 1: 512-2466 bp Neighborhood of RT #1 [512, 2466] RVT_N RVT-GII GIIM Feature: gene Location: 512-715 bp Feature: gene Location: 681-2348 bp Ori: KAA5305263.1 Gene: ltrA Feature: domain Description: RVT_N Location: 735-978 bp Feature: domain Description: RVT_N Location: 735-978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1023-1671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 023-1 671 bp Feature: domain Description: GIIM Note: maturase Location: 1725-1956 bp Feature: domain Description: GIIM Note: maturase Location: 1 725-1 956 bp Feature: gene Location: 2332-2466 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: VVZU01000043.1 Bacteroides dorei strain BIOML-A24 scaffold43_size13393, whole genome shotgun sequence (13393 bp)
Overview 1 RT 1: 10308-13393 bp Neighborhood of RT #1 [10308, 13393] DUF3876 DUF4141 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 10308-10688 bp Ori: KAA5305380.1 Feature: domain Description: DUF3876 Location: 10392-10653 bp Feature: domain Description: DUF3876 Location: 10392 -10653 bp Feature: gene Location: 10712-10891 bp Ori: KAA5305381.1 Feature: domain Description: DUF4141 Location: 10724-10877 bp Feature: domain Description: DUF4141 Location: 1072 4-10877 bp Feature: gene Location: 11450-13258 bp Ori: KAA5305382.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11714-12536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11714-12 536 bp Feature: domain Description: Intron_maturas2 Location: 12632-12971 bp Feature: domain Description: Intron_maturas2 Location: 12 632 -12 971 bp Feature: domain Description: HNHc Note: nucleases Location: 13079-13232 bp Feature: domain Description: HNHc Note: nucleases Location: 13079-132 32 bp Feature: gene Location: 13245-13393 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), DUF4141 (pfam13605), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VVZU01000018.1 Bacteroides dorei strain BIOML-A24 scaffold18_size209140, whole genome shotgun sequence (209140 bp)
Overview 1 RT 1: 110145-119539 bp 2 RT 2: 130122-137197 bp Neighborhood of RT #1 [110145, 119745] RVT-GII GIIM HTH_17 HTH_17 HTH_17 HTH_17 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like COG3943 RVT-UG2 HTH_17 DUF3987 Neighborhood of RT #2 [130122, 137232] COG0610 COG0610 HTH_XRE RVT_N RVT-GII GIIM SMODS SLATT_4 Feature: gene Location: 110145-110360 bp Feature: gene Location: 110387-110470 bp Feature: gene Location: 110467-111915 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110596-111244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110596-111244 bp Feature: domain Description: GIIM Note: maturase Location: 111295-111529 bp Feature: domain Description: GIIM Note: maturase Location: 111295-111529 bp Feature: gene Location: 112188-113099 bp Ori: KAA5307412.1 Feature: domain Description: HTH_17 Location: 112401-112551 bp Feature: domain Description: HTH_17 Location: 112401-112551 bp Feature: domain Description: HTH_17 Location: 112599-112746 bp Feature: domain Description: HTH_17 Location: 112599-112746 bp Feature: domain Description: HTH_17 Location: 112773-112902 bp Feature: domain Description: HTH_17 Location: 112773 -112902 bp Feature: domain Description: HTH_17 Location: 112941-113082 bp Feature: domain Description: HTH_17 Location: 112941-113 082 bp Feature: gene Location: 113184-114290 bp Ori: KAA5307413.1 Feature: domain Description: Arm-DNA-bind_5 Location: 113208-113415 bp Feature: domain Description: Arm-DNA-bind_5 Location: 113 208-113 415 bp Feature: domain Description: Phage_int_SAM_5 Location: 113469-113739 bp Feature: domain Description: Phage_int_SAM_5 Location: 113 469-113 73 9 bp Feature: domain Description: INTN1_C_like Location: 113799-114255 bp Feature: domain Description: INTN1_C_like Location: 113 799-114255 bp Feature: gene Location: 114300-114665 bp Ori: KAA5307414.1 Feature: domain Description: COG3943 Location: 114342-114597 bp Feature: domain Description: COG3 943 Location: 1143 42-114597 bp Feature: gene Location: 114930-115817 bp Feature: gene Location: 115829-117412 bp Ori: KAA5307416.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 116066-117026 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 116066-117026 bp Feature: gene Location: 117992-118357 bp Ori: KAA5307417.1 Feature: domain Description: HTH_17 Location: 118127-118265 bp Feature: domain Description: HTH_17 Location: 118127-118265 bp Feature: gene Location: 118369-119745 bp Ori: KAA5307418.1 Feature: domain Description: DUF3987 Location: 118519-119539 bp Feature: domain Description: DUF3 987 Location: 118519-11953 9 bp Feature: gene Location: 130122-133352 bp Ori: KAA5307429.1 Feature: domain Description: COG0610 Location: 130140-130665 bp Feature: domain Description: COG0610 Location: 13 0140-13 0665 bp Feature: domain Description: COG0610 Location: 130911-132945 bp Feature: domain Description: COG0610 Location: 13 0911-13 2945 bp Feature: gene Location: 133354-133557 bp Ori: KAA5307430.1 Feature: domain Description: HTH_XRE Location: 133366-133534 bp Feature: domain Description: HTH_XRE Location: 13 3 3 66-13 3 53 4 bp Feature: gene Location: 133675-135222 bp Ori: KAA5307431.1 Gene: ltrA Feature: domain Description: RVT_N Location: 133744-133987 bp Feature: domain Description: RVT_N Location: 13 3 744-13 3 987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134032-134677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 403 2-13 4677 bp Feature: domain Description: GIIM Note: maturase Location: 134731-134965 bp Feature: domain Description: GIIM Note: maturase Location: 13 473 1-13 4965 bp Feature: gene Location: 135857-136666 bp Ori: KAA5307432.1 Feature: domain Description: SMODS Location: 135890-136355 bp Feature: domain Description: SMODS Location: 13 5890-13 63 55 bp Feature: gene Location: 136672-137232 bp Ori: KAA5307433.1 Feature: domain Description: SLATT_4 Location: 136699-137197 bp Feature: domain Description: SLATT_4 Location: 13 6699-13 7197 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_17 (pfam12728), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), COG3943 (Uncharacterized conserved protein ), RVT-UG2, DUF3987 (pfam13148), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases )
HTH_XRE (smart00530), RVT_N (pfam13655), SMODS (pfam18144), SLATT_4 (pfam18186)

Seq: VVZU01000003.1 Bacteroides dorei strain BIOML-A24 scaffold3_size231956, whole genome shotgun sequence (231956 bp)
Overview 1 RT 1: 20489-27879 bp Neighborhood of RT #1 [20489, 27890] dnaG RVT-UG24 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like HTH_17 Feature: gene Location: 20489-21523 bp Ori: KAA5311519.1 Feature: domain Description: dnaG Location: 20576-21479 bp Feature: domain Description: dnaG Location: 20576-214 79 bp Feature: gene Location: 21530-22270 bp Feature: gene Location: 22272-25709 bp Ori: KAA5311521.1 Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 22782-23247 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 22782-2324 7 bp Feature: gene Location: 26146-27351 bp Ori: KAA5311522.1 Feature: domain Description: Arm-DNA-bind_5 Location: 26179-26395 bp Feature: domain Description: Arm-DNA-bind_5 Location: 26179-26395 bp Feature: domain Description: Phage_int_SAM_5 Location: 26533-26761 bp Feature: domain Description: Phage_int_SAM_5 Location: 26533-26761 bp Feature: domain Description: INTN1_C_like Location: 26833-27337 bp Feature: domain Description: INTN1_C_like Location: 26833-27337 bp Feature: gene Location: 27612-27890 bp Ori: KAA5311523.1 Feature: domain Description: HTH_17 Location: 27732-27879 bp Feature: domain Description: HTH_17 Location: 27732-27879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), RVT-UG24, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), HTH_17 (pfam12728)