myRT

myRT report for GCA_008571825.1_ASM857182v1

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Seq: VVZQ01000019.1 Bacteroides dorei strain BIOML-A20 scaffold19_size123501, whole genome shotgun sequence (123501 bp)
Overview 1 RT 1: 5145-13962 bp Neighborhood of RT #1 [5145, 13962] HTH_17 RVT-UG2 COG3943 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like HTH_17 HTH_17 HTH_17 HTH_17 RVT-GII GIIM Feature: gene Location: 5145-5510 bp Feature: domain Description: HTH_17 Location: 5280-5418 bp Feature: domain Description: HTH_1 7 Location: 5280-541 8 bp Feature: gene Location: 5850-6056 bp Feature: gene Location: 6090-7673 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 6327-7287 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 6327-7287 bp Feature: gene Location: 7685-8572 bp Feature: gene Location: 8837-9202 bp Feature: domain Description: COG3943 Location: 8879-9134 bp Feature: domain Description: COG3943 Location: 8879-91 34 bp Feature: gene Location: 9212-10318 bp Feature: domain Description: Arm-DNA-bind_5 Location: 9236-9443 bp Feature: domain Description: Arm-DNA-bind_5 Location: 9236-9443 bp Feature: domain Description: Phage_int_SAM_5 Location: 9497-9767 bp Feature: domain Description: Phage_int_SAM_5 Location: 9497-9767 bp Feature: domain Description: INTN1_C_like Location: 9827-10283 bp Feature: domain Description: INTN1 _C_like Location: 9827-1 0283 bp Feature: gene Location: 10403-11314 bp Feature: domain Description: HTH_17 Location: 10616-10766 bp Feature: domain Description: HTH_1 7 Location: 1 061 6-1 0766 bp Feature: domain Description: HTH_17 Location: 10814-10961 bp Feature: domain Description: HTH_1 7 Location: 1 081 4-1 0961 bp Feature: domain Description: HTH_17 Location: 10988-11117 bp Feature: domain Description: HTH_1 7 Location: 1 0988-1 1 1 1 7 bp Feature: domain Description: HTH_17 Location: 11156-11297 bp Feature: domain Description: HTH_1 7 Location: 1 1 1 56-1 1 297 bp Feature: gene Location: 11557-13035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11716-12364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 71 6-1 2364 bp Feature: domain Description: GIIM Note: maturase Location: 12415-12649 bp Feature: domain Description: GIIM Note: maturase Location: 1 241 5-1 2649 bp Feature: gene Location: 13361-13666 bp Feature: gene Location: 13768-13962 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), RVT-UG2, COG3943 (Uncharacterized conserved protein ), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-GII, GIIM (pfam08388)

Seq: VVZQ01000026.1 Bacteroides dorei strain BIOML-A20 scaffold26_size84070, whole genome shotgun sequence (84070 bp)
Overview 1 RT 1: 5052-12127 bp Neighborhood of RT #1 [5052, 12162] COG0610 COG0610 HTH_XRE RVT_N RVT-GII GIIM SMODS SLATT_4 Feature: gene Location: 5052-8282 bp Feature: domain Description: COG0610 Location: 5070-5595 bp Feature: domain Description: COG0610 Location: 5070-5595 bp Feature: domain Description: COG0610 Location: 5841-7875 bp Feature: domain Description: COG0610 Location: 5841-7875 bp Feature: gene Location: 8284-8586 bp Feature: domain Description: HTH_XRE Location: 8395-8563 bp Feature: domain Description: HTH_XRE Location: 8395-8563 bp Feature: gene Location: 8605-10152 bp Feature: domain Description: RVT_N Location: 8674-8917 bp Feature: domain Description: RVT_N Location: 8674-8917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8962-9607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8962 -9607 bp Feature: domain Description: GIIM Note: maturase Location: 9661-9895 bp Feature: domain Description: GIIM Note: maturase Location: 9661-9895 bp Feature: gene Location: 10787-11596 bp Feature: domain Description: SMODS Location: 10820-11285 bp Feature: domain Description: SMODS Location: 1082 0-112 85 bp Feature: gene Location: 11602-12162 bp Feature: domain Description: SLATT_4 Location: 11629-12127 bp Feature: domain Description: SLATT_4 Location: 1162 9-12 12 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), HTH_XRE (smart00530), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), SMODS (pfam18144), SLATT_4 (pfam18186)

Seq: VVZQ01000005.1 Bacteroides dorei strain BIOML-A20 scaffold5_size231956, whole genome shotgun sequence (231956 bp)
Overview 1 RT 1: 20489-27879 bp Neighborhood of RT #1 [20489, 27890] dnaG RVT-UG24 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like HTH_17 Feature: gene Location: 20489-21523 bp Feature: domain Description: dnaG Location: 20576-21479 bp Feature: domain Description: dnaG Location: 20576-21479 bp Feature: gene Location: 21530-22270 bp Feature: gene Location: 22272-25709 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 22782-23247 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 22782-23 247 bp Feature: gene Location: 26146-27351 bp Feature: domain Description: Arm-DNA-bind_5 Location: 26179-26395 bp Feature: domain Description: Arm-DNA-bind_5 Location: 26179-263 95 bp Feature: domain Description: Phage_int_SAM_5 Location: 26533-26761 bp Feature: domain Description: Phage_int_SAM_5 Location: 2653 3 -26761 bp Feature: domain Description: INTN1_C_like Location: 26833-27337 bp Feature: domain Description: INTN1_C_like Location: 2683 3 -273 3 7 bp Feature: gene Location: 27489-27890 bp Feature: domain Description: HTH_17 Location: 27732-27879 bp Feature: domain Description: HTH_17 Location: 2773 2-27879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), RVT-UG24, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), HTH_17 (pfam12728)

Seq: VVZQ01000060.1 Bacteroides dorei strain BIOML-A20 scaffold60_size2521, whole genome shotgun sequence (2521 bp)
Overview 1 RT 1: 136-1918 bp Neighborhood of RT #1 [136, 1944] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 136-1944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400-1222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 00-1222 bp Feature: domain Description: Intron_maturas2 Location: 1318-1657 bp Feature: domain Description: Intron_maturas2 Location: 1318-1657 bp Feature: domain Description: HNHc Note: nucleases Location: 1765-1918 bp Feature: domain Description: HNHc Note: nucleases Location: 1765-1918 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VVZQ01000062.1 Bacteroides dorei strain BIOML-A20 scaffold62_size2466, whole genome shotgun sequence (2466 bp)
Overview 1 RT 1: 681-1956 bp Neighborhood of RT #1 [681, 2348] RVT_N RVT-GII GIIM Feature: gene Location: 681-2348 bp Feature: domain Description: RVT_N Location: 735-978 bp Feature: domain Description: RVT_N Location: 735 -978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1023-1671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1023-1671 bp Feature: domain Description: GIIM Note: maturase Location: 1725-1956 bp Feature: domain Description: GIIM Note: maturase Location: 1725 -195 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)