myRT

myRT report for GCA_008571875.1_ASM857187v1

Download annotations/find similar RTs

Seq: VVZN01000003.1 Bacteroides dorei strain BIOML-A17 scaffold9_size130531, whole genome shotgun sequence (130064 bp)
Overview 1 RT 1: 34292-43686 bp 2 RT 2: 54269-61344 bp Neighborhood of RT #1 [34292, 43892] RVT-GII GIIM HTH_17 HTH_17 HTH_17 HTH_17 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like COG3943 RVT-UG2 HTH_17 DUF3987 Neighborhood of RT #2 [54269, 61379] COG0610 COG0610 HTH_XRE RVT_N RVT-GII GIIM SMODS SLATT_4 Feature: gene Location: 34292-34507 bp Feature: gene Location: 34534-34617 bp Feature: gene Location: 34614-36062 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34743-35391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34743-35391 bp Feature: domain Description: GIIM Note: maturase Location: 35442-35676 bp Feature: domain Description: GIIM Note: maturase Location: 35442-35676 bp Feature: gene Location: 36335-37246 bp Ori: KAA5335468.1 Feature: domain Description: HTH_17 Location: 36548-36698 bp Feature: domain Description: HTH_1 7 Location: 36548-36698 bp Feature: domain Description: HTH_17 Location: 36746-36893 bp Feature: domain Description: HTH_1 7 Location: 36746-36893 bp Feature: domain Description: HTH_17 Location: 36920-37049 bp Feature: domain Description: HTH_1 7 Location: 36920-37049 bp Feature: domain Description: HTH_17 Location: 37088-37229 bp Feature: domain Description: HTH_1 7 Location: 37088-37229 bp Feature: gene Location: 37331-38437 bp Ori: KAA5335469.1 Feature: domain Description: Arm-DNA-bind_5 Location: 37355-37562 bp Feature: domain Description: Arm-DNA-bind_5 Location: 37355-37562 bp Feature: domain Description: Phage_int_SAM_5 Location: 37616-37886 bp Feature: domain Description: Phage_int_SAM_5 Location: 3761 6-37886 bp Feature: domain Description: INTN1_C_like Location: 37946-38402 bp Feature: domain Description: INTN1 _C_like Location: 37946-38402 bp Feature: gene Location: 38447-38812 bp Ori: KAA5335470.1 Feature: domain Description: COG3943 Location: 38489-38744 bp Feature: domain Description: COG3943 Location: 38489-38744 bp Feature: gene Location: 39077-39964 bp Feature: gene Location: 39976-41559 bp Ori: KAA5335472.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 40213-41173 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 4021 3-41 1 73 bp Feature: gene Location: 42139-42504 bp Ori: KAA5335473.1 Feature: domain Description: HTH_17 Location: 42274-42412 bp Feature: domain Description: HTH_1 7 Location: 42274-4241 2 bp Feature: gene Location: 42516-43892 bp Ori: KAA5335474.1 Feature: domain Description: DUF3987 Location: 42666-43686 bp Feature: domain Description: DUF3987 Location: 42666-43686 bp Feature: gene Location: 54269-57499 bp Ori: KAA5335484.1 Feature: domain Description: COG0610 Location: 54287-54812 bp Feature: domain Description: COG061 0 Location: 54287-5481 2 bp Feature: domain Description: COG0610 Location: 55058-57092 bp Feature: domain Description: COG061 0 Location: 55058-57092 bp Feature: gene Location: 57501-57704 bp Ori: KAA5335485.1 Feature: domain Description: HTH_XRE Location: 57513-57681 bp Feature: domain Description: HTH_XRE Location: 5751 3-57681 bp Feature: gene Location: 57822-59369 bp Ori: KAA5335486.1 Gene: ltrA Feature: domain Description: RVT_N Location: 57891-58134 bp Feature: domain Description: RVT_N Location: 57891 -581 34 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58179-58824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 581 79-58824 bp Feature: domain Description: GIIM Note: maturase Location: 58878-59112 bp Feature: domain Description: GIIM Note: maturase Location: 58878-591 1 2 bp Feature: gene Location: 60004-60813 bp Ori: KAA5335487.1 Feature: domain Description: SMODS Location: 60037-60502 bp Feature: domain Description: SMODS Location: 60037-60502 bp Feature: gene Location: 60819-61379 bp Ori: KAA5335488.1 Feature: domain Description: SLATT_4 Location: 60846-61344 bp Feature: domain Description: SLATT_4 Location: 60846-61 344 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_17 (pfam12728), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), COG3943 (Uncharacterized conserved protein ), RVT-UG2, DUF3987 (pfam13148), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases )
HTH_XRE (smart00530), RVT_N (pfam13655), SMODS (pfam18144), SLATT_4 (pfam18186)

Seq: VVZN01000075.1 Bacteroides dorei strain BIOML-A17 scaffold286_size2466, whole genome shotgun sequence (2466 bp)
Overview 1 RT 1: 512-2466 bp Neighborhood of RT #1 [512, 2466] RVT_N RVT-GII GIIM Feature: gene Location: 512-715 bp Feature: gene Location: 681-2348 bp Ori: KAA5325559.1 Gene: ltrA Feature: domain Description: RVT_N Location: 735-978 bp Feature: domain Description: RVT_N Location: 735-978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1023-1671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102 3-1671 bp Feature: domain Description: GIIM Note: maturase Location: 1725-1956 bp Feature: domain Description: GIIM Note: maturase Location: 172 5-1956 bp Feature: gene Location: 2332-2466 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: VVZN01000027.1 Bacteroides dorei strain BIOML-A17 scaffold61_size119737, whole genome shotgun sequence (118756 bp)
Overview 1 RT 1: 10308-17242 bp Neighborhood of RT #1 [10308, 17271] DUF3876 DUF4141 RVT-GII Intron_maturas2 HNHc SesA Bac_Flav_CT_J RVT_N RVT-GII GIIM Bac_Flav_CT_J Feature: gene Location: 10308-10688 bp Ori: KAA5329089.1 Feature: domain Description: DUF3876 Location: 10392-10653 bp Feature: domain Description: DUF3 876 Location: 103 92-10653 bp Feature: gene Location: 10712-10891 bp Ori: KAA5329090.1 Feature: domain Description: DUF4141 Location: 10724-10877 bp Feature: domain Description: DUF4141 Location: 10724-10877 bp Feature: gene Location: 11450-13258 bp Ori: KAA5329091.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11714-12536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11714-1253 6 bp Feature: domain Description: Intron_maturas2 Location: 12632-12971 bp Feature: domain Description: Intron_maturas2 Location: 1263 2-12971 bp Feature: domain Description: HNHc Note: nucleases Location: 13079-13232 bp Feature: domain Description: HNHc Note: nucleases Location: 13 079-13 23 2 bp Feature: gene Location: 13245-13835 bp Ori: KAA5329092.1 Feature: domain Description: SesA Location: 13380-13710 bp Feature: domain Description: SesA Location: 13 3 80-13 710 bp Feature: gene Location: 13839-14666 bp Gene: traJ Feature: domain Description: Bac_Flav_CT_J Location: 13845-14667 bp Feature: domain Description: Bac_Flav_CT_J Location: 13 845-14667 bp Feature: gene Location: 14697-14971 bp Feature: gene Location: 15314-16996 bp Ori: KAA5329093.1 Gene: ltrA Feature: domain Description: RVT_N Location: 15368-15611 bp Feature: domain Description: RVT_N Location: 153 68-15611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15656-16313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15656-163 13 bp Feature: domain Description: GIIM Note: maturase Location: 16364-16598 bp Feature: domain Description: GIIM Note: maturase Location: 163 64-16598 bp Feature: gene Location: 16977-17093 bp Feature: gene Location: 17095-17271 bp Feature: domain Description: Bac_Flav_CT_J Location: 17098-17242 bp Feature: domain Description: Bac_Flav_CT_J Location: 17098-17242 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), DUF4141 (pfam13605), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), SesA (pfam17107), Bac_Flav_CT_J (TIGR03782), RVT_N (pfam13655), GIIM (pfam08388)

Seq: VVZN01000001.1 Bacteroides dorei strain BIOML-A17 scaffold4_size70029, whole genome shotgun sequence (69779 bp)
Overview 1 RT 1: 20489-27879 bp Neighborhood of RT #1 [20489, 27890] dnaG RVT-UG24 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like HTH_17 Feature: gene Location: 20489-21523 bp Ori: KAA5336155.1 Feature: domain Description: dnaG Location: 20576-21479 bp Feature: domain Description: dnaG Location: 20576-214 79 bp Feature: gene Location: 21530-22270 bp Feature: gene Location: 22272-25709 bp Ori: KAA5336157.1 Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 22782-23247 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 22782-2324 7 bp Feature: gene Location: 26146-27351 bp Ori: KAA5336158.1 Feature: domain Description: Arm-DNA-bind_5 Location: 26179-26395 bp Feature: domain Description: Arm-DNA-bind_5 Location: 26179-26395 bp Feature: domain Description: Phage_int_SAM_5 Location: 26533-26761 bp Feature: domain Description: Phage_int_SAM_5 Location: 26533-26761 bp Feature: domain Description: INTN1_C_like Location: 26833-27337 bp Feature: domain Description: INTN1_C_like Location: 26833-27337 bp Feature: gene Location: 27612-27890 bp Ori: KAA5336159.1 Feature: domain Description: HTH_17 Location: 27732-27879 bp Feature: domain Description: HTH_17 Location: 27732-27879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), RVT-UG24, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), HTH_17 (pfam12728)