myRT

myRT report for GCA_008571925.1_ASM857192v1

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Seq: VVZL01000018.1 Bacteroides dorei strain BIOML-A15 scaffold18_size209457, whole genome shotgun sequence (209627 bp)
Overview 1 RT 1: 72475-78612 bp 2 RT 2: 91271-100088 bp Neighborhood of RT #1 [72475, 79019] SMODS RVT_N RVT-GII GIIM HTH_XRE COG0610 COG0610 Neighborhood of RT #2 [91271, 100088] HTH_17 RVT-UG2 COG3943 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like HTH_17 HTH_17 HTH_17 HTH_17 RVT-GII GIIM Feature: gene Location: 72475-73284 bp Feature: domain Description: SMODS Location: 72508-72973 bp Feature: domain Description: SMODS Location: 72508-72973 bp Feature: gene Location: 73749-73886 bp Feature: gene Location: 73919-75466 bp Feature: domain Description: RVT_N Location: 73988-74231 bp Feature: domain Description: RVT_N Location: 73988-74231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74276-74921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74276-74921 bp Feature: domain Description: GIIM Note: maturase Location: 74975-75209 bp Feature: domain Description: GIIM Note: maturase Location: 74975-75209 bp Feature: gene Location: 75485-75787 bp Feature: domain Description: HTH_XRE Location: 75596-75764 bp Feature: domain Description: HTH_XRE Location: 75596-75764 bp Feature: gene Location: 75789-79019 bp Feature: domain Description: COG0610 Location: 75807-76332 bp Feature: domain Description: COG061 0 Location: 75807-76332 bp Feature: domain Description: COG0610 Location: 76578-78612 bp Feature: domain Description: COG061 0 Location: 76578-7861 2 bp Feature: gene Location: 91271-91636 bp Feature: domain Description: HTH_17 Location: 91406-91544 bp Feature: domain Description: HTH_1 7 Location: 91 406-91 544 bp Feature: gene Location: 91976-92182 bp Feature: gene Location: 92216-93799 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 92453-93413 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 92453-9341 3 bp Feature: gene Location: 93811-94698 bp Feature: gene Location: 94963-95328 bp Feature: domain Description: COG3943 Location: 95005-95260 bp Feature: domain Description: COG3943 Location: 95005-95260 bp Feature: gene Location: 95338-96444 bp Feature: domain Description: Arm-DNA-bind_5 Location: 95362-95569 bp Feature: domain Description: Arm-DNA-bind_5 Location: 95362-95569 bp Feature: domain Description: Phage_int_SAM_5 Location: 95623-95893 bp Feature: domain Description: Phage_int_SAM_5 Location: 95623-95893 bp Feature: domain Description: INTN1_C_like Location: 95953-96409 bp Feature: domain Description: INTN1 _C_like Location: 95953-96409 bp Feature: gene Location: 96529-97440 bp Feature: domain Description: HTH_17 Location: 96742-96892 bp Feature: domain Description: HTH_1 7 Location: 96742-96892 bp Feature: domain Description: HTH_17 Location: 96940-97087 bp Feature: domain Description: HTH_1 7 Location: 96940-97087 bp Feature: domain Description: HTH_17 Location: 97114-97243 bp Feature: domain Description: HTH_1 7 Location: 971 1 4-97243 bp Feature: domain Description: HTH_17 Location: 97282-97423 bp Feature: domain Description: HTH_1 7 Location: 97282-97423 bp Feature: gene Location: 97683-99161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97842-98490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97842-98490 bp Feature: domain Description: GIIM Note: maturase Location: 98541-98775 bp Feature: domain Description: GIIM Note: maturase Location: 98541 -98775 bp Feature: gene Location: 99487-99792 bp Feature: gene Location: 99894-100088 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SMODS (pfam18144), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HTH_XRE (smart00530), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), HTH_17 (pfam12728), RVT-UG2, COG3943 (Uncharacterized conserved protein ), Arm-DNA-bind_5 (pfam17293)
Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: VVZL01000038.1 Bacteroides dorei strain BIOML-A15 scaffold38_size29537, whole genome shotgun sequence (29537 bp)
Overview 1 RT 1: 20489-27879 bp Neighborhood of RT #1 [20489, 27890] dnaG RVT-UG24 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like HTH_17 Feature: gene Location: 20489-21523 bp Feature: domain Description: dnaG Location: 20576-21479 bp Feature: domain Description: dnaG Location: 2 0576-2 1479 bp Feature: gene Location: 21530-22270 bp Feature: gene Location: 22272-25709 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 22782-23247 bp Feature: RT Description: RVT-UG2 4 Note: UG2 4 RT Location: 2 2 782 -2 32 47 bp Feature: gene Location: 26146-27351 bp Feature: domain Description: Arm-DNA-bind_5 Location: 26179-26395 bp Feature: domain Description: Arm-DNA-bind_5 Location: 2 6179-2 6395 bp Feature: domain Description: Phage_int_SAM_5 Location: 26533-26761 bp Feature: domain Description: Phage_int_SAM_5 Location: 2 6533-2 6761 bp Feature: domain Description: INTN1_C_like Location: 26833-27337 bp Feature: domain Description: INTN1_C_like Location: 2 6833-2 7337 bp Feature: gene Location: 27489-27890 bp Feature: domain Description: HTH_17 Location: 27732-27879 bp Feature: domain Description: HTH_17 Location: 2 7732 -2 7879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), RVT-UG24, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), HTH_17 (pfam12728)

Seq: VVZL01000042.1 Bacteroides dorei strain BIOML-A15 scaffold42_size24422, whole genome shotgun sequence (24330 bp)
Overview 1 RT 1: 21245-24328 bp Neighborhood of RT #1 [21245, 24328] DUF3876 DUF4141 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 21245-21625 bp Feature: domain Description: DUF3876 Location: 21326-21590 bp Feature: domain Description: DUF3 876 Location: 213 26-21590 bp Feature: gene Location: 21649-21828 bp Feature: domain Description: DUF4141 Location: 21664-21814 bp Feature: domain Description: DUF4141 Location: 21664-21814 bp Feature: gene Location: 22387-24195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22651-23473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22651-23 473 bp Feature: domain Description: Intron_maturas2 Location: 23569-23908 bp Feature: domain Description: Intron_maturas2 Location: 23 569-23 908 bp Feature: domain Description: HNHc Note: nucleases Location: 24016-24169 bp Feature: domain Description: HNHc Note: nucleases Location: 24016-24169 bp Feature: gene Location: 24182-24328 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), DUF4141 (pfam13605), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VVZL01000060.1 Bacteroides dorei strain BIOML-A15 scaffold60_size2466, whole genome shotgun sequence (2466 bp)
Overview 1 RT 1: 681-1956 bp Neighborhood of RT #1 [681, 2348] RVT_N RVT-GII GIIM Feature: gene Location: 681-2348 bp Feature: domain Description: RVT_N Location: 735-978 bp Feature: domain Description: RVT_N Location: 735-978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1023-1671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1023-1671 bp Feature: domain Description: GIIM Note: maturase Location: 1725-1956 bp Feature: domain Description: GIIM Note: maturase Location: 1725-1956 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)