myRT

myRT report for GCA_008571955.1_ASM857195v1

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Seq: VVZK01000065.1 Bacteroides dorei strain BIOML-A14 scaffold65_size2466, whole genome shotgun sequence (2466 bp)
Overview 1 RT 1: 512-2466 bp Neighborhood of RT #1 [512, 2466] RVT_N RVT-GII GIIM Feature: gene Location: 512-715 bp Feature: gene Location: 681-2348 bp Ori: KAA5350392.1 Gene: ltrA Feature: domain Description: RVT_N Location: 735-978 bp Feature: domain Description: RVT_N Location: 735-978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1023-1671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 023-1 671 bp Feature: domain Description: GIIM Note: maturase Location: 1725-1956 bp Feature: domain Description: GIIM Note: maturase Location: 1 725-1 956 bp Feature: gene Location: 2332-2466 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: VVZK01000024.1 Bacteroides dorei strain BIOML-A14 scaffold24_size85855, whole genome shotgun sequence (86103 bp)
Overview 1 RT 1: 7085-14160 bp Neighborhood of RT #1 [7085, 14195] COG0610 COG0610 HTH_XRE RVT_N RVT-GII GIIM SMODS SLATT_4 Feature: gene Location: 7085-10315 bp Ori: KAA5354121.1 Feature: domain Description: COG0610 Location: 7103-7628 bp Feature: domain Description: COG0610 Location: 7103-762 8 bp Feature: domain Description: COG0610 Location: 7874-9908 bp Feature: domain Description: COG0610 Location: 7874-9908 bp Feature: gene Location: 10317-10520 bp Ori: KAA5354122.1 Feature: domain Description: HTH_XRE Location: 10329-10497 bp Feature: domain Description: HTH_XRE Location: 1032 9-10497 bp Feature: gene Location: 10638-12185 bp Ori: KAA5354123.1 Gene: ltrA Feature: domain Description: RVT_N Location: 10707-10950 bp Feature: domain Description: RVT_N Location: 10707-10950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10995-11640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10995-11640 bp Feature: domain Description: GIIM Note: maturase Location: 11694-11928 bp Feature: domain Description: GIIM Note: maturase Location: 11694-1192 8 bp Feature: gene Location: 12820-13629 bp Ori: KAA5354124.1 Feature: domain Description: SMODS Location: 12853-13318 bp Feature: domain Description: SMODS Location: 12 853-13318 bp Feature: gene Location: 13635-14195 bp Ori: KAA5354125.1 Feature: domain Description: SLATT_4 Location: 13662-14160 bp Feature: domain Description: SLATT_4 Location: 13662 -14160 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), HTH_XRE (smart00530), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), SMODS (pfam18144), SLATT_4 (pfam18186)

Seq: VVZK01000022.1 Bacteroides dorei strain BIOML-A14 scaffold22_size89381, whole genome shotgun sequence (89381 bp)
Overview 1 RT 1: 85410-88778 bp Neighborhood of RT #1 [85410, 88804] Bac_Flav_CT_J SesA RVT-GII Intron_maturas2 HNHc Feature: gene Location: 85410-86414 bp Ori: KAA5354523.1 Gene: traJ Feature: domain Description: Bac_Flav_CT_J Location: 85416-86385 bp Feature: domain Description: Bac_Flav_CT_J Location: 85416-863 85 bp Feature: gene Location: 86419-87009 bp Ori: KAA5354524.1 Feature: domain Description: SesA Location: 86554-86884 bp Feature: domain Description: SesA Location: 86554-86884 bp Feature: gene Location: 86996-88804 bp Ori: KAA5354525.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87260-88082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87260-88082 bp Feature: domain Description: Intron_maturas2 Location: 88178-88517 bp Feature: domain Description: Intron_maturas2 Location: 88178-88517 bp Feature: domain Description: HNHc Note: nucleases Location: 88625-88778 bp Feature: domain Description: HNHc Note: nucleases Location: 88625-88778 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_J (TIGR03782), SesA (pfam17107), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VVZK01000017.1 Bacteroides dorei strain BIOML-A14 scaffold17_size123591, whole genome shotgun sequence (123501 bp)
Overview 1 RT 1: 3757-13357 bp Neighborhood of RT #1 [3757, 13357] DUF3987 HTH_17 RVT-UG2 COG3943 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like HTH_17 HTH_17 HTH_17 HTH_17 RVT-GII GIIM Feature: gene Location: 3757-5133 bp Ori: KAA5356150.1 Feature: domain Description: DUF3987 Location: 3907-4927 bp Feature: domain Description: DUF3987 Location: 3907-4 927 bp Feature: gene Location: 5145-5510 bp Ori: KAA5356151.1 Feature: domain Description: HTH_17 Location: 5280-5418 bp Feature: domain Description: HTH_17 Location: 5280-54 18 bp Feature: gene Location: 6090-7673 bp Ori: KAA5356152.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 6327-7287 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 6327-7287 bp Feature: gene Location: 7685-8572 bp Feature: gene Location: 8837-9202 bp Ori: KAA5356154.1 Feature: domain Description: COG3943 Location: 8879-9134 bp Feature: domain Description: COG394 3 Location: 8879-9134 bp Feature: gene Location: 9212-10318 bp Ori: KAA5356155.1 Feature: domain Description: Arm-DNA-bind_5 Location: 9236-9443 bp Feature: domain Description: Arm-DNA-bind_5 Location: 9236-94 4 3 bp Feature: domain Description: Phage_int_SAM_5 Location: 9497-9767 bp Feature: domain Description: Phage_int_SAM_5 Location: 94 97-9767 bp Feature: domain Description: INTN1_C_like Location: 9827-10283 bp Feature: domain Description: INTN1_C_like Location: 9827-10283 bp Feature: gene Location: 10403-11314 bp Ori: KAA5356156.1 Feature: domain Description: HTH_17 Location: 10616-10766 bp Feature: domain Description: HTH_17 Location: 10616-10766 bp Feature: domain Description: HTH_17 Location: 10814-10961 bp Feature: domain Description: HTH_17 Location: 10814 -10961 bp Feature: domain Description: HTH_17 Location: 10988-11117 bp Feature: domain Description: HTH_17 Location: 10988-11117 bp Feature: domain Description: HTH_17 Location: 11156-11297 bp Feature: domain Description: HTH_17 Location: 11156-11297 bp Feature: gene Location: 11587-13035 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11716-12364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11716-12364 bp Feature: domain Description: GIIM Note: maturase Location: 12415-12649 bp Feature: domain Description: GIIM Note: maturase Location: 124 15-1264 9 bp Feature: gene Location: 13032-13115 bp Feature: gene Location: 13142-13357 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3987 (pfam13148), HTH_17 (pfam12728), RVT-UG2, COG3943 (Uncharacterized conserved protein ), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-GII, GIIM (pfam08388)

Seq: VVZK01000007.1 Bacteroides dorei strain BIOML-A14 scaffold7_size232146, whole genome shotgun sequence (232062 bp)
Overview 1 RT 1: 20489-27879 bp Neighborhood of RT #1 [20489, 27890] dnaG RVT-UG24 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like HTH_17 Feature: gene Location: 20489-21523 bp Ori: KAA5361330.1 Feature: domain Description: dnaG Location: 20576-21479 bp Feature: domain Description: dnaG Location: 205 76-21479 bp Feature: gene Location: 21530-22270 bp Feature: gene Location: 22272-25709 bp Ori: KAA5361332.1 Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 22782-23247 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 22782-23247 bp Feature: gene Location: 26146-27351 bp Ori: KAA5361333.1 Feature: domain Description: Arm-DNA-bind_5 Location: 26179-26395 bp Feature: domain Description: Arm-DNA-bind_5 Location: 26179-26395 bp Feature: domain Description: Phage_int_SAM_5 Location: 26533-26761 bp Feature: domain Description: Phage_int_SAM_5 Location: 265 33-26761 bp Feature: domain Description: INTN1_C_like Location: 26833-27337 bp Feature: domain Description: INTN1_C_like Location: 26833-27337 bp Feature: gene Location: 27612-27890 bp Ori: KAA5361334.1 Feature: domain Description: HTH_17 Location: 27732-27879 bp Feature: domain Description: HTH_17 Location: 27732-27879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), RVT-UG24, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), HTH_17 (pfam12728)