myRT

myRT report for GCA_008571985.1_ASM857198v1

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Seq: VVZI01000009.1 Bacteroides dorei strain BIOML-A12 scaffold9_size232438, whole genome shotgun sequence (232293 bp)
Overview 1 RT 1: 20489-27879 bp Neighborhood of RT #1 [20489, 27890] dnaG RVT-UG24 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like HTH_17 Feature: gene Location: 20489-21523 bp Ori: KAA5361128.1 Feature: domain Description: dnaG Location: 20576-21479 bp Feature: domain Description: dnaG Location: 20576-21 479 bp Feature: gene Location: 21530-22270 bp Feature: gene Location: 22272-25709 bp Ori: KAA5361130.1 Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 22782-23247 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 22782-23247 bp Feature: gene Location: 26146-27351 bp Ori: KAA5361131.1 Feature: domain Description: Arm-DNA-bind_5 Location: 26179-26395 bp Feature: domain Description: Arm-DNA-bind_5 Location: 261 79-26395 bp Feature: domain Description: Phage_int_SAM_5 Location: 26533-26761 bp Feature: domain Description: Phage_int_SAM_5 Location: 26533-26761 bp Feature: domain Description: INTN1_C_like Location: 26833-27337 bp Feature: domain Description: INTN1 _C_like Location: 26833-27337 bp Feature: gene Location: 27612-27890 bp Ori: KAA5361132.1 Feature: domain Description: HTH_17 Location: 27732-27879 bp Feature: domain Description: HTH_1 7 Location: 27732-27879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), RVT-UG24, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), HTH_17 (pfam12728)

Seq: VVZI01000008.1 Bacteroides dorei strain BIOML-A12 scaffold8_size214869, whole genome shotgun sequence (214769 bp)
Overview 1 RT 1: 115774-125168 bp 2 RT 2: 135751-142826 bp Neighborhood of RT #1 [115774, 125374] RVT-GII GIIM HTH_17 HTH_17 HTH_17 HTH_17 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like COG3943 RVT-UG2 HTH_17 DUF3987 Neighborhood of RT #2 [135751, 142861] COG0610 COG0610 HTH_XRE RVT_N RVT-GII GIIM SMODS SLATT_4 Feature: gene Location: 115774-115989 bp Feature: gene Location: 116016-116099 bp Feature: gene Location: 116096-117544 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116225-116873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1162 2 5-116873 bp Feature: domain Description: GIIM Note: maturase Location: 116924-117158 bp Feature: domain Description: GIIM Note: maturase Location: 11692 4-117158 bp Feature: gene Location: 117817-118728 bp Ori: KAA5361599.1 Feature: domain Description: HTH_17 Location: 118030-118180 bp Feature: domain Description: HTH_17 Location: 118030-118180 bp Feature: domain Description: HTH_17 Location: 118228-118375 bp Feature: domain Description: HTH_17 Location: 1182 2 8-118375 bp Feature: domain Description: HTH_17 Location: 118402-118531 bp Feature: domain Description: HTH_17 Location: 118402 -118531 bp Feature: domain Description: HTH_17 Location: 118570-118711 bp Feature: domain Description: HTH_17 Location: 118570-118711 bp Feature: gene Location: 118813-119919 bp Ori: KAA5361600.1 Feature: domain Description: Arm-DNA-bind_5 Location: 118837-119044 bp Feature: domain Description: Arm-DNA-bind_5 Location: 118837-119044 bp Feature: domain Description: Phage_int_SAM_5 Location: 119098-119368 bp Feature: domain Description: Phage_int_SAM_5 Location: 119098-119368 bp Feature: domain Description: INTN1_C_like Location: 119428-119884 bp Feature: domain Description: INTN1_C_like Location: 11942 8-119884 bp Feature: gene Location: 119929-120294 bp Ori: KAA5361601.1 Feature: domain Description: COG3943 Location: 119971-120226 bp Feature: domain Description: COG3943 Location: 119971-12 02 2 6 bp Feature: gene Location: 120559-121446 bp Feature: gene Location: 121458-123041 bp Ori: KAA5361603.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 121695-122655 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 12 1695-12 2 655 bp Feature: gene Location: 123621-123986 bp Ori: KAA5361604.1 Feature: domain Description: HTH_17 Location: 123756-123894 bp Feature: domain Description: HTH_17 Location: 12 3756-12 3894 bp Feature: gene Location: 123998-125374 bp Ori: KAA5361605.1 Feature: domain Description: DUF3987 Location: 124148-125168 bp Feature: domain Description: DUF3987 Location: 12 4148-12 5168 bp Feature: gene Location: 135751-138981 bp Ori: KAA5361616.1 Feature: domain Description: COG0610 Location: 135769-136294 bp Feature: domain Description: COG0610 Location: 135769-1362 94 bp Feature: domain Description: COG0610 Location: 136540-138574 bp Feature: domain Description: COG0610 Location: 136540-138574 bp Feature: gene Location: 138983-139186 bp Ori: KAA5361617.1 Feature: domain Description: HTH_XRE Location: 138995-139163 bp Feature: domain Description: HTH_XRE Location: 138995-139163 bp Feature: gene Location: 139304-140851 bp Ori: KAA5361618.1 Gene: ltrA Feature: domain Description: RVT_N Location: 139373-139616 bp Feature: domain Description: RVT_N Location: 139373-139616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139661-140306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139661-140306 bp Feature: domain Description: GIIM Note: maturase Location: 140360-140594 bp Feature: domain Description: GIIM Note: maturase Location: 140360-140594 bp Feature: gene Location: 141486-142295 bp Ori: KAA5361619.1 Feature: domain Description: SMODS Location: 141519-141984 bp Feature: domain Description: SMODS Location: 141519-141984 bp Feature: gene Location: 142301-142861 bp Ori: KAA5361620.1 Feature: domain Description: SLATT_4 Location: 142328-142826 bp Feature: domain Description: SLATT_4 Location: 142 32 8-142 82 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_17 (pfam12728), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), COG3943 (Uncharacterized conserved protein ), RVT-UG2, DUF3987 (pfam13148), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases )
HTH_XRE (smart00530), RVT_N (pfam13655), SMODS (pfam18144), SLATT_4 (pfam18186)

Seq: VVZI01000063.1 Bacteroides dorei strain BIOML-A12 scaffold63_size2466, whole genome shotgun sequence (2466 bp)
Overview 1 RT 1: 512-2466 bp Neighborhood of RT #1 [512, 2466] RVT_N RVT-GII GIIM Feature: gene Location: 512-715 bp Feature: gene Location: 681-2348 bp Ori: KAA5353936.1 Gene: ltrA Feature: domain Description: RVT_N Location: 735-978 bp Feature: domain Description: RVT_N Location: 73 5-978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1023-1671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1023 -1671 bp Feature: domain Description: GIIM Note: maturase Location: 1725-1956 bp Feature: domain Description: GIIM Note: maturase Location: 1725-1956 bp Feature: gene Location: 2332-2466 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: VVZI01000061.1 Bacteroides dorei strain BIOML-A12 scaffold61_size2521, whole genome shotgun sequence (2521 bp)
Overview 1 RT 1: 1-1918 bp Neighborhood of RT #1 [1, 1944] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1-149 bp Feature: gene Location: 136-1944 bp Ori: KAA5354023.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400-1222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 00-1222 bp Feature: domain Description: Intron_maturas2 Location: 1318-1657 bp Feature: domain Description: Intron_maturas2 Location: 1318-1657 bp Feature: domain Description: HNHc Note: nucleases Location: 1765-1918 bp Feature: domain Description: HNHc Note: nucleases Location: 1765-1918 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)