myRT

myRT report for GCA_008572035.1_ASM857203v1

Download annotations/find similar RTs

Seq: VVZF01000005.1 Bacteroides dorei strain BIOML-A9 scaffold5_size231853, whole genome shotgun sequence (231853 bp)
Overview 1 RT 1: 20489-27879 bp Neighborhood of RT #1 [20489, 27890] dnaG RVT-UG24 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like HTH_17 Feature: gene Location: 20489-21523 bp Ori: KAA5375097.1 Feature: domain Description: dnaG Location: 20576-21479 bp Feature: domain Description: dnaG Location: 20576-21 479 bp Feature: gene Location: 21530-22270 bp Feature: gene Location: 22272-25709 bp Ori: KAA5375099.1 Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 22782-23247 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 22782-23247 bp Feature: gene Location: 26146-27351 bp Ori: KAA5375100.1 Feature: domain Description: Arm-DNA-bind_5 Location: 26179-26395 bp Feature: domain Description: Arm-DNA-bind_5 Location: 261 79-26395 bp Feature: domain Description: Phage_int_SAM_5 Location: 26533-26761 bp Feature: domain Description: Phage_int_SAM_5 Location: 26533-26761 bp Feature: domain Description: INTN1_C_like Location: 26833-27337 bp Feature: domain Description: INTN1 _C_like Location: 26833-27337 bp Feature: gene Location: 27612-27890 bp Ori: KAA5375101.1 Feature: domain Description: HTH_17 Location: 27732-27879 bp Feature: domain Description: HTH_1 7 Location: 27732-27879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), RVT-UG24, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), HTH_17 (pfam12728)

Seq: VVZF01000006.1 Bacteroides dorei strain BIOML-A9 scaffold6_size214769, whole genome shotgun sequence (214769 bp)
Overview 1 RT 1: 115774-125168 bp 2 RT 2: 135751-142826 bp Neighborhood of RT #1 [115774, 125374] RVT-GII GIIM HTH_17 HTH_17 HTH_17 HTH_17 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like COG3943 RVT-UG2 HTH_17 DUF3987 Neighborhood of RT #2 [135751, 142861] COG0610 COG0610 HTH_XRE RVT_N RVT-GII GIIM SMODS SLATT_4 Feature: gene Location: 115774-115989 bp Feature: gene Location: 116016-116099 bp Feature: gene Location: 116096-117544 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116225-116873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1162 2 5-116873 bp Feature: domain Description: GIIM Note: maturase Location: 116924-117158 bp Feature: domain Description: GIIM Note: maturase Location: 11692 4-117158 bp Feature: gene Location: 117817-118728 bp Ori: KAA5374696.1 Feature: domain Description: HTH_17 Location: 118030-118180 bp Feature: domain Description: HTH_17 Location: 118030-118180 bp Feature: domain Description: HTH_17 Location: 118228-118375 bp Feature: domain Description: HTH_17 Location: 1182 2 8-118375 bp Feature: domain Description: HTH_17 Location: 118402-118531 bp Feature: domain Description: HTH_17 Location: 118402 -118531 bp Feature: domain Description: HTH_17 Location: 118570-118711 bp Feature: domain Description: HTH_17 Location: 118570-118711 bp Feature: gene Location: 118813-119919 bp Ori: KAA5374697.1 Feature: domain Description: Arm-DNA-bind_5 Location: 118837-119044 bp Feature: domain Description: Arm-DNA-bind_5 Location: 118837-119044 bp Feature: domain Description: Phage_int_SAM_5 Location: 119098-119368 bp Feature: domain Description: Phage_int_SAM_5 Location: 119098-119368 bp Feature: domain Description: INTN1_C_like Location: 119428-119884 bp Feature: domain Description: INTN1_C_like Location: 11942 8-119884 bp Feature: gene Location: 119929-120294 bp Ori: KAA5374698.1 Feature: domain Description: COG3943 Location: 119971-120226 bp Feature: domain Description: COG3943 Location: 119971-12 02 2 6 bp Feature: gene Location: 120559-121446 bp Feature: gene Location: 121458-123041 bp Ori: KAA5374700.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 121695-122655 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 12 1695-12 2 655 bp Feature: gene Location: 123621-123986 bp Ori: KAA5374701.1 Feature: domain Description: HTH_17 Location: 123756-123894 bp Feature: domain Description: HTH_17 Location: 12 3756-12 3894 bp Feature: gene Location: 123998-125374 bp Ori: KAA5374702.1 Feature: domain Description: DUF3987 Location: 124148-125168 bp Feature: domain Description: DUF3987 Location: 12 4148-12 5168 bp Feature: gene Location: 135751-138981 bp Ori: KAA5374713.1 Feature: domain Description: COG0610 Location: 135769-136294 bp Feature: domain Description: COG0610 Location: 135769-1362 94 bp Feature: domain Description: COG0610 Location: 136540-138574 bp Feature: domain Description: COG0610 Location: 136540-138574 bp Feature: gene Location: 138983-139186 bp Ori: KAA5374714.1 Feature: domain Description: HTH_XRE Location: 138995-139163 bp Feature: domain Description: HTH_XRE Location: 138995-139163 bp Feature: gene Location: 139304-140851 bp Ori: KAA5374715.1 Gene: ltrA Feature: domain Description: RVT_N Location: 139373-139616 bp Feature: domain Description: RVT_N Location: 139373-139616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139661-140306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139661-140306 bp Feature: domain Description: GIIM Note: maturase Location: 140360-140594 bp Feature: domain Description: GIIM Note: maturase Location: 140360-140594 bp Feature: gene Location: 141486-142295 bp Ori: KAA5374716.1 Feature: domain Description: SMODS Location: 141519-141984 bp Feature: domain Description: SMODS Location: 141519-141984 bp Feature: gene Location: 142301-142861 bp Ori: KAA5374717.1 Feature: domain Description: SLATT_4 Location: 142328-142826 bp Feature: domain Description: SLATT_4 Location: 142 32 8-142 82 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_17 (pfam12728), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), COG3943 (Uncharacterized conserved protein ), RVT-UG2, DUF3987 (pfam13148), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases )
HTH_XRE (smart00530), RVT_N (pfam13655), SMODS (pfam18144), SLATT_4 (pfam18186)

Seq: VVZF01000038.1 Bacteroides dorei strain BIOML-A9 scaffold38_size16361, whole genome shotgun sequence (16277 bp)
Overview 1 RT 1: 512-3774 bp Neighborhood of RT #1 [512, 3774] RVT_N RVT-GII GIIM Feature: gene Location: 512-715 bp Feature: gene Location: 681-2348 bp Ori: KAA5365713.1 Gene: ltrA Feature: domain Description: RVT_N Location: 735-978 bp Feature: domain Description: RVT_N Location: 73 5-978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1023-1671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1023 -1671 bp Feature: domain Description: GIIM Note: maturase Location: 1725-1956 bp Feature: domain Description: GIIM Note: maturase Location: 1725-1956 bp Feature: gene Location: 2332-3435 bp Feature: gene Location: 3568-3774 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: VVZF01000041.1 Bacteroides dorei strain BIOML-A9 scaffold41_size11228, whole genome shotgun sequence (11228 bp)
Overview 1 RT 1: 2835-7336 bp Neighborhood of RT #1 [2835, 7371] Bac_Flav_CT_J SesA RVT-GII Intron_maturas2 HNHc DUF4141 DUF3876 Feature: gene Location: 2835-3839 bp Ori: KAA5365587.1 Gene: traJ Feature: domain Description: Bac_Flav_CT_J Location: 2841-3810 bp Feature: domain Description: Bac_Flav_CT_J Location: 284 1-3810 bp Feature: gene Location: 3844-4434 bp Ori: KAA5365588.1 Feature: domain Description: SesA Location: 3979-4309 bp Feature: domain Description: SesA Location: 3979-4 309 bp Feature: gene Location: 4421-6229 bp Ori: KAA5365589.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4685-5507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 685-5507 bp Feature: domain Description: Intron_maturas2 Location: 5603-5942 bp Feature: domain Description: Intron_maturas2 Location: 5603-594 2 bp Feature: domain Description: HNHc Note: nucleases Location: 6050-6203 bp Feature: domain Description: HNHc Note: nucleases Location: 6050-6203 bp Feature: gene Location: 6788-6967 bp Ori: KAA5365590.1 Feature: domain Description: DUF4141 Location: 6800-6953 bp Feature: domain Description: DUF4 14 1 Location: 6800-6953 bp Feature: gene Location: 6991-7371 bp Ori: KAA5365591.1 Feature: domain Description: DUF3876 Location: 7075-7336 bp Feature: domain Description: DUF3876 Location: 7075-7336 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_J (TIGR03782), SesA (pfam17107), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605), DUF3876 (pfam12992)