myRT

myRT report for GCA_008572075.1_ASM857207v1

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Seq: VVZD01000004.1 Bacteroides dorei strain BIOML-A7 scaffold4_size419571, whole genome shotgun sequence (419571 bp)
Overview 1 RT 1: 71909-78612 bp 2 RT 2: 89396-98996 bp Neighborhood of RT #1 [71909, 79019] SLATT_4 SMODS RVT_N RVT-GII GIIM HTH_XRE COG0610 COG0610 Neighborhood of RT #2 [89396, 98996] DUF3987 HTH_17 RVT-UG2 COG3943 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like HTH_17 HTH_17 HTH_17 HTH_17 RVT-GII GIIM Feature: gene Location: 71909-72469 bp Ori: KAA5375646.1 Feature: domain Description: SLATT_4 Location: 71936-72434 bp Feature: domain Description: SLATT_4 Location: 71 936-72434 bp Feature: gene Location: 72475-73284 bp Ori: KAA5375647.1 Feature: domain Description: SMODS Location: 72508-72973 bp Feature: domain Description: SMODS Location: 72508-72973 bp Feature: gene Location: 73919-75466 bp Ori: KAA5375648.1 Gene: ltrA Feature: domain Description: RVT_N Location: 73988-74231 bp Feature: domain Description: RVT_N Location: 73988-74231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74276-74921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74276-74921 bp Feature: domain Description: GIIM Note: maturase Location: 74975-75209 bp Feature: domain Description: GIIM Note: maturase Location: 74975-75209 bp Feature: gene Location: 75584-75787 bp Ori: KAA5375649.1 Feature: domain Description: HTH_XRE Location: 75596-75764 bp Feature: domain Description: HTH_XRE Location: 75596-75764 bp Feature: gene Location: 75789-79019 bp Ori: KAA5375650.1 Feature: domain Description: COG0610 Location: 75807-76332 bp Feature: domain Description: COG061 0 Location: 75807-76332 bp Feature: domain Description: COG0610 Location: 76578-78612 bp Feature: domain Description: COG061 0 Location: 76578-7861 2 bp Feature: gene Location: 89396-90772 bp Ori: KAA5375661.1 Feature: domain Description: DUF3987 Location: 89546-90566 bp Feature: domain Description: DUF3987 Location: 89546-90566 bp Feature: gene Location: 90784-91149 bp Ori: KAA5375662.1 Feature: domain Description: HTH_17 Location: 90919-91057 bp Feature: domain Description: HTH_1 7 Location: 9091 9-91 057 bp Feature: gene Location: 91729-93312 bp Ori: KAA5375663.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 91966-92926 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 91 966-92926 bp Feature: gene Location: 93324-94211 bp Feature: gene Location: 94476-94841 bp Ori: KAA5375665.1 Feature: domain Description: COG3943 Location: 94518-94773 bp Feature: domain Description: COG3943 Location: 9451 8-94773 bp Feature: gene Location: 94851-95957 bp Ori: KAA5375666.1 Feature: domain Description: Arm-DNA-bind_5 Location: 94875-95082 bp Feature: domain Description: Arm-DNA-bind_5 Location: 94875-95082 bp Feature: domain Description: Phage_int_SAM_5 Location: 95136-95406 bp Feature: domain Description: Phage_int_SAM_5 Location: 951 36-95406 bp Feature: domain Description: INTN1_C_like Location: 95466-95922 bp Feature: domain Description: INTN1 _C_like Location: 95466-95922 bp Feature: gene Location: 96042-96953 bp Ori: KAA5375667.1 Feature: domain Description: HTH_17 Location: 96255-96405 bp Feature: domain Description: HTH_1 7 Location: 96255-96405 bp Feature: domain Description: HTH_17 Location: 96453-96600 bp Feature: domain Description: HTH_1 7 Location: 96453-96600 bp Feature: domain Description: HTH_17 Location: 96627-96756 bp Feature: domain Description: HTH_1 7 Location: 96627-96756 bp Feature: domain Description: HTH_17 Location: 96795-96936 bp Feature: domain Description: HTH_1 7 Location: 96795-96936 bp Feature: gene Location: 97226-98674 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97355-98003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97355-98003 bp Feature: domain Description: GIIM Note: maturase Location: 98054-98288 bp Feature: domain Description: GIIM Note: maturase Location: 98054-98288 bp Feature: gene Location: 98671-98754 bp Feature: gene Location: 98781-98996 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_4 (pfam18186), SMODS (pfam18144), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HTH_XRE (smart00530), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), DUF3987 (pfam13148), HTH_17 (pfam12728), RVT-UG2
COG3943 (Uncharacterized conserved protein ), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: VVZD01000091.1 Bacteroides dorei strain BIOML-A7 scaffold91_size2466, whole genome shotgun sequence (2466 bp)
Overview 1 RT 1: 512-2466 bp Neighborhood of RT #1 [512, 2466] RVT_N RVT-GII GIIM Feature: gene Location: 512-715 bp Feature: gene Location: 681-2348 bp Ori: KAA5366727.1 Gene: ltrA Feature: domain Description: RVT_N Location: 735-978 bp Feature: domain Description: RVT_N Location: 735-978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1023-1671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102 3-1671 bp Feature: domain Description: GIIM Note: maturase Location: 1725-1956 bp Feature: domain Description: GIIM Note: maturase Location: 172 5-1956 bp Feature: gene Location: 2332-2466 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: VVZD01000019.1 Bacteroides dorei strain BIOML-A7 scaffold19_size101022, whole genome shotgun sequence (101022 bp)
Overview 1 RT 1: 20489-27879 bp Neighborhood of RT #1 [20489, 27890] dnaG RVT-UG24 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like HTH_17 Feature: gene Location: 20489-21523 bp Ori: KAA5371596.1 Feature: domain Description: dnaG Location: 20576-21479 bp Feature: domain Description: dnaG Location: 20576-21479 bp Feature: gene Location: 21530-22270 bp Feature: gene Location: 22272-25709 bp Ori: KAA5371598.1 Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 22782-23247 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 22782-23 247 bp Feature: gene Location: 26146-27351 bp Ori: KAA5371599.1 Feature: domain Description: Arm-DNA-bind_5 Location: 26179-26395 bp Feature: domain Description: Arm-DNA-bind_5 Location: 26179-263 95 bp Feature: domain Description: Phage_int_SAM_5 Location: 26533-26761 bp Feature: domain Description: Phage_int_SAM_5 Location: 2653 3 -26761 bp Feature: domain Description: INTN1_C_like Location: 26833-27337 bp Feature: domain Description: INTN1_C_like Location: 2683 3 -273 3 7 bp Feature: gene Location: 27612-27890 bp Ori: KAA5371600.1 Feature: domain Description: HTH_17 Location: 27732-27879 bp Feature: domain Description: HTH_17 Location: 2773 2-27879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), RVT-UG24, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), HTH_17 (pfam12728)

Seq: VVZD01000090.1 Bacteroides dorei strain BIOML-A7 scaffold90_size2521, whole genome shotgun sequence (2521 bp)
Overview 1 RT 1: 1-1918 bp Neighborhood of RT #1 [1, 1944] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1-149 bp Feature: gene Location: 136-1944 bp Ori: KAA5366730.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400-1222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 00-1222 bp Feature: domain Description: Intron_maturas2 Location: 1318-1657 bp Feature: domain Description: Intron_maturas2 Location: 1318-1657 bp Feature: domain Description: HNHc Note: nucleases Location: 1765-1918 bp Feature: domain Description: HNHc Note: nucleases Location: 1765-1918 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)