myRT

myRT report for GCA_008572095.1_ASM857209v1

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Seq: VVZE01000019.1 Bacteroides dorei strain BIOML-A8 scaffold19_size100907, whole genome shotgun sequence (100907 bp)
Overview 1 RT 1: 20489-27879 bp Neighborhood of RT #1 [20489, 27890] dnaG RVT-UG24 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like HTH_17 Feature: gene Location: 20489-21523 bp Ori: KAA5381742.1 Feature: domain Description: dnaG Location: 20576-21479 bp Feature: domain Description: dnaG Location: 20576-21 479 bp Feature: gene Location: 21530-22270 bp Feature: gene Location: 22272-25709 bp Ori: KAA5381744.1 Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 22782-23247 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 22782-23247 bp Feature: gene Location: 26146-27351 bp Ori: KAA5381745.1 Feature: domain Description: Arm-DNA-bind_5 Location: 26179-26395 bp Feature: domain Description: Arm-DNA-bind_5 Location: 261 79-26395 bp Feature: domain Description: Phage_int_SAM_5 Location: 26533-26761 bp Feature: domain Description: Phage_int_SAM_5 Location: 26533-26761 bp Feature: domain Description: INTN1_C_like Location: 26833-27337 bp Feature: domain Description: INTN1 _C_like Location: 26833-27337 bp Feature: gene Location: 27612-27890 bp Ori: KAA5381746.1 Feature: domain Description: HTH_17 Location: 27732-27879 bp Feature: domain Description: HTH_1 7 Location: 27732-27879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), RVT-UG24, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), HTH_17 (pfam12728)

Seq: VVZE01000078.1 Bacteroides dorei strain BIOML-A8 scaffold78_size4175, whole genome shotgun sequence (4175 bp)
Overview 1 RT 1: 1-3877 bp Neighborhood of RT #1 [1, 3999] RVT_N RVT-GII GIIM Spc7 Feature: gene Location: 1-408 bp Feature: gene Location: 896-1099 bp Feature: gene Location: 1065-2732 bp Ori: KAA5378578.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1119-1362 bp Feature: domain Description: RVT_N Location: 1119-1362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1407-2055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1407-2 055 bp Feature: domain Description: GIIM Note: maturase Location: 2109-2340 bp Feature: domain Description: GIIM Note: maturase Location: 2 109-2 340 bp Feature: gene Location: 2734-3999 bp Ori: KAA5378579.1 Feature: domain Description: Spc7 Location: 3610-3877 bp Feature: domain Description: Spc7 Location: 3610-3877 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Spc7 (smart00787)

Seq: VVZE01000030.1 Bacteroides dorei strain BIOML-A8 scaffold30_size41618, whole genome shotgun sequence (41618 bp)
Overview 1 RT 1: 11828-15899 bp Neighborhood of RT #1 [11828, 15976] RVT-DGRs TipAS COG2369 LPD3 Feature: gene Location: 11828-12070 bp Feature: gene Location: 12274-12759 bp Feature: gene Location: 12756-14058 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12969-13362 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12969-13 3 62 bp Feature: gene Location: 14434-14667 bp Feature: gene Location: 14765-15976 bp Ori: KAA5380124.1 Feature: domain Description: TipAS Location: 14789-15092 bp Feature: domain Description: TipAS Location: 14789-15092 bp Feature: domain Description: COG2369 Location: 15212-15398 bp Feature: domain Description: COG23 69 Location: 15212-153 98 bp Feature: domain Description: LPD3 Location: 15617-15899 bp Feature: domain Description: LPD3 Location: 15617-15899 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, TipAS (pfam07739), COG2369 (Uncharacterized conserved protein, contains phage Mu gpF-like domain ), LPD3 (pfam18798)

Seq: VVZE01000075.1 Bacteroides dorei strain BIOML-A8 scaffold75_size5416, whole genome shotgun sequence (5416 bp)
Overview 1 RT 1: 2229-5416 bp Neighborhood of RT #1 [2229, 5416] DUF3876 DUF4141 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 2229-2609 bp Ori: KAA5378619.1 Feature: domain Description: DUF3876 Location: 2310-2574 bp Feature: domain Description: DUF3876 Location: 2310-2574 bp Feature: gene Location: 2633-2812 bp Ori: KAA5378620.1 Feature: domain Description: DUF4141 Location: 2645-2798 bp Feature: domain Description: DUF4 14 1 Location: 264 5-2798 bp Feature: gene Location: 3371-5179 bp Ori: KAA5378621.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3635-4457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3635-4 4 57 bp Feature: domain Description: Intron_maturas2 Location: 4553-4892 bp Feature: domain Description: Intron_maturas2 Location: 4 553-4 892 bp Feature: domain Description: HNHc Note: nucleases Location: 5000-5153 bp Feature: domain Description: HNHc Note: nucleases Location: 5000-5153 bp Feature: gene Location: 5166-5416 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), DUF4141 (pfam13605), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VVZE01000008.1 Bacteroides dorei strain BIOML-A8 scaffold8_size370244, whole genome shotgun sequence (370244 bp)
Overview 1 RT 1: 71909-78612 bp 2 RT 2: 89396-98996 bp Neighborhood of RT #1 [71909, 79019] SLATT_4 SMODS RVT_N RVT-GII GIIM HTH_XRE COG0610 COG0610 Neighborhood of RT #2 [89396, 98996] DUF3987 HTH_17 RVT-UG2 COG3943 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like HTH_17 HTH_17 HTH_17 HTH_17 RVT-GII GIIM Feature: gene Location: 71909-72469 bp Ori: KAA5385614.1 Feature: domain Description: SLATT_4 Location: 71936-72434 bp Feature: domain Description: SLATT_4 Location: 71936-72434 bp Feature: gene Location: 72475-73284 bp Ori: KAA5385615.1 Feature: domain Description: SMODS Location: 72508-72973 bp Feature: domain Description: SMODS Location: 725 08-72973 bp Feature: gene Location: 73919-75466 bp Ori: KAA5385616.1 Gene: ltrA Feature: domain Description: RVT_N Location: 73988-74231 bp Feature: domain Description: RVT_N Location: 73988-74231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74276-74921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74276-74921 bp Feature: domain Description: GIIM Note: maturase Location: 74975-75209 bp Feature: domain Description: GIIM Note: maturase Location: 74975 -75 209 bp Feature: gene Location: 75584-75787 bp Ori: KAA5385617.1 Feature: domain Description: HTH_XRE Location: 75596-75764 bp Feature: domain Description: HTH_XRE Location: 75 5 96-75 764 bp Feature: gene Location: 75789-79019 bp Ori: KAA5385618.1 Feature: domain Description: COG0610 Location: 75807-76332 bp Feature: domain Description: COG0610 Location: 75 807-76332 bp Feature: domain Description: COG0610 Location: 76578-78612 bp Feature: domain Description: COG0610 Location: 765 78-78612 bp Feature: gene Location: 89396-90772 bp Ori: KAA5385629.1 Feature: domain Description: DUF3987 Location: 89546-90566 bp Feature: domain Description: DUF3987 Location: 895 46-905 66 bp Feature: gene Location: 90784-91149 bp Ori: KAA5385630.1 Feature: domain Description: HTH_17 Location: 90919-91057 bp Feature: domain Description: HTH_17 Location: 90919-9105 7 bp Feature: gene Location: 91729-93312 bp Ori: KAA5385631.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 91966-92926 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 91966-92926 bp Feature: gene Location: 93324-94211 bp Feature: gene Location: 94476-94841 bp Ori: KAA5385633.1 Feature: domain Description: COG3943 Location: 94518-94773 bp Feature: domain Description: COG3943 Location: 945 18-94773 bp Feature: gene Location: 94851-95957 bp Ori: KAA5385634.1 Feature: domain Description: Arm-DNA-bind_5 Location: 94875-95082 bp Feature: domain Description: Arm-DNA-bind_5 Location: 94875 -95 082 bp Feature: domain Description: Phage_int_SAM_5 Location: 95136-95406 bp Feature: domain Description: Phage_int_SAM_5 Location: 95 136-95 406 bp Feature: domain Description: INTN1_C_like Location: 95466-95922 bp Feature: domain Description: INTN1_C_like Location: 95 466-95 922 bp Feature: gene Location: 96042-96953 bp Ori: KAA5385635.1 Feature: domain Description: HTH_17 Location: 96255-96405 bp Feature: domain Description: HTH_17 Location: 9625 5 -96405 bp Feature: domain Description: HTH_17 Location: 96453-96600 bp Feature: domain Description: HTH_17 Location: 9645 3-96600 bp Feature: domain Description: HTH_17 Location: 96627-96756 bp Feature: domain Description: HTH_17 Location: 96627-9675 6 bp Feature: domain Description: HTH_17 Location: 96795-96936 bp Feature: domain Description: HTH_17 Location: 96795 -96936 bp Feature: gene Location: 97226-98674 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97355-98003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9735 5 -98003 bp Feature: domain Description: GIIM Note: maturase Location: 98054-98288 bp Feature: domain Description: GIIM Note: maturase Location: 9805 4-98288 bp Feature: gene Location: 98671-98754 bp Feature: gene Location: 98781-98996 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_4 (pfam18186), SMODS (pfam18144), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HTH_XRE (smart00530), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), DUF3987 (pfam13148), HTH_17 (pfam12728), RVT-UG2
COG3943 (Uncharacterized conserved protein ), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)