myRT

myRT report for GCA_008572155.1_ASM857215v1

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Seq: VVYZ01000029.1 Bacteroides dorei strain BIOML-A3 scaffold29_size64623, whole genome shotgun sequence (64623 bp)
Overview 1 RT 1: 10683-14280 bp Neighborhood of RT #1 [10683, 14280] COG2865 RVT_N RVT-GII GIIM Feature: gene Location: 10683-11054 bp Feature: domain Description: COG2865 Location: 10767-11031 bp Feature: domain Description: COG2865 Location: 1 0767-1 1 031 bp Feature: gene Location: 11355-11573 bp Feature: gene Location: 11692-13353 bp Feature: RT Description: RVT_N Location: 11746-11989 bp Feature: RT Description: RVT_N Location: 1 1 746-1 1 989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12034-12682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2034-1 2682 bp Feature: domain Description: GIIM Note: maturase Location: 12733-12967 bp Feature: domain Description: GIIM Note: maturase Location: 1 2733-1 2967 bp Feature: gene Location: 13679-13984 bp Feature: gene Location: 14086-14280 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2865 (Predicted transcriptional regulator, contains HTH domain ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: VVYZ01000002.1 Bacteroides dorei strain BIOML-A3 scaffold2_size372026, whole genome shotgun sequence (372026 bp)
Overview 1 RT 1: 244028-247691 bp Neighborhood of RT #1 [244028, 247691] INTN1_C_like HTH_17 RVT_N RVT-GII GIIM Feature: gene Location: 244028-244489 bp Feature: domain Description: INTN1_C_like Location: 244034-244454 bp Feature: domain Description: INTN1_C_like Location: 2 44034-2 44454 bp Feature: gene Location: 244492-245259 bp Feature: domain Description: HTH_17 Location: 245080-245215 bp Feature: domain Description: HTH_17 Location: 2 45080-2 452 15 bp Feature: gene Location: 245441-247096 bp Feature: RT Description: RVT_N Location: 245498-245735 bp Feature: RT Description: RVT_N Location: 2 45498-2 45735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 245786-246434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 45786-2 46434 bp Feature: domain Description: GIIM Note: maturase Location: 246491-246722 bp Feature: domain Description: GIIM Note: maturase Location: 2 46491-2 4672 2 bp Feature: gene Location: 247181-247354 bp Feature: gene Location: 247398-247691 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INTN1_C_like (cd01185), HTH_17 (pfam12728), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: VVYZ01000046.1 Bacteroides dorei strain BIOML-A3 scaffold46_size12716, whole genome shotgun sequence (12716 bp)
Overview 1 RT 1: 599-7558 bp Neighborhood of RT #1 [599, 9696] Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C KAP_NTPase Feature: gene Location: 599-1846 bp Feature: domain Description: Relaxase Location: 791-1151 bp Feature: domain Description: Relaxase Location: 791-1151 bp Feature: gene Location: 1877-2803 bp Feature: domain Description: YWFCY Location: 1886-2063 bp Feature: domain Description: YWFCY Location: 1886-2063 bp Feature: gene Location: 3439-5091 bp Feature: RT Description: RVT_N Location: 3493-3736 bp Feature: RT Description: RVT_N Location: 3 493 -3 73 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3781-4429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 781-4429 bp Feature: domain Description: GIIM Note: maturase Location: 4483-4714 bp Feature: domain Description: GIIM Note: maturase Location: 4483 -4714 bp Feature: gene Location: 5096-6310 bp Feature: domain Description: TraG-D_C Location: 5678-6008 bp Feature: domain Description: TraG-D_C Location: 5678-6008 bp Feature: gene Location: 6442-9696 bp Feature: domain Description: KAP_NTPase Location: 6580-7558 bp Feature: domain Description: KAP_NTPase Location: 6580-7558 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696), Relaxase (pfam03432)

Seq: VVYZ01000067.1 Bacteroides dorei strain BIOML-A3 scaffold67_size2649, whole genome shotgun sequence (2649 bp)
Overview 1 RT 1: 651-2118 bp Neighborhood of RT #1 [651, 2459] RVT-GII Intron_maturas2 Feature: gene Location: 651-2459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 915-1737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 915-1737 bp Feature: domain Description: Intron_maturas2 Location: 1863-2118 bp Feature: domain Description: Intron_maturas2 Location: 1863-2118 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)