myRT

myRT report for GCA_008572205.1_ASM857220v1

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Seq: VVYY01000027.1 Bacteroides dorei strain BIOML-A1 scaffold27_size64887, whole genome shotgun sequence (64887 bp)
Overview 1 RT 1: 10947-14544 bp Neighborhood of RT #1 [10947, 14544] COG2865 RVT_N RVT-GII GIIM Feature: gene Location: 10947-11318 bp Feature: domain Description: COG2865 Location: 11031-11295 bp Feature: domain Description: COG2865 Location: 1 1 031 -1 1 295 bp Feature: gene Location: 11619-11837 bp Feature: gene Location: 11956-13617 bp Feature: RT Description: RVT_N Location: 12010-12253 bp Feature: RT Description: RVT_N Location: 1 201 0-1 2253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12298-12946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2298-1 2946 bp Feature: domain Description: GIIM Note: maturase Location: 12997-13231 bp Feature: domain Description: GIIM Note: maturase Location: 1 2997-1 3231 bp Feature: gene Location: 13943-14248 bp Feature: gene Location: 14350-14544 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2865 (Predicted transcriptional regulator, contains HTH domain ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: VVYY01000003.1 Bacteroides dorei strain BIOML-A1 scaffold3_size372026, whole genome shotgun sequence (372026 bp)
Overview 1 RT 1: 124080-127964 bp Neighborhood of RT #1 [124080, 127999] RVT_N RVT-GII GIIM HTH_17 INTN1_C_like Feature: gene Location: 124080-124415 bp Feature: gene Location: 124440-124649 bp Feature: gene Location: 124931-126586 bp Feature: RT Description: RVT_N Location: 124988-125225 bp Feature: RT Description: RVT_N Location: 12 4988-12 52 2 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125276-125924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 52 76-12 592 4 bp Feature: domain Description: GIIM Note: maturase Location: 125981-126212 bp Feature: domain Description: GIIM Note: maturase Location: 12 5981-12 62 12 bp Feature: gene Location: 126768-127535 bp Feature: domain Description: HTH_17 Location: 127356-127491 bp Feature: domain Description: HTH_17 Location: 12 7356-12 7491 bp Feature: gene Location: 127538-127999 bp Feature: domain Description: INTN1_C_like Location: 127544-127964 bp Feature: domain Description: INTN1_C_like Location: 12 7544-12 7964 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HTH_17 (pfam12728), INTN1_C_like (cd01185)

Seq: VVYY01000045.1 Bacteroides dorei strain BIOML-A1 scaffold45_size22535, whole genome shotgun sequence (22330 bp)
Overview 1 RT 1: 17513-21983 bp Neighborhood of RT #1 [17513, 22000] HTH_17 COG3943 RVT-GII Intron_maturas2 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 17513-17818 bp Feature: domain Description: HTH_17 Location: 17651-17780 bp Feature: domain Description: HTH_17 Location: 17651-17780 bp Feature: gene Location: 17896-18258 bp Feature: domain Description: COG3943 Location: 17935-18184 bp Feature: domain Description: COG3 943 Location: 1793 5-18184 bp Feature: gene Location: 18472-20280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18736-19558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1873 6-19558 bp Feature: domain Description: Intron_maturas2 Location: 19684-19939 bp Feature: domain Description: Intron_maturas2 Location: 19684-1993 9 bp Feature: gene Location: 20831-22000 bp Feature: domain Description: Arm-DNA-bind_5 Location: 20861-21116 bp Feature: domain Description: Arm-DNA-bind_5 Location: 20861-21116 bp Feature: domain Description: Phage_int_SAM_5 Location: 21155-21476 bp Feature: domain Description: Phage_int_SAM_5 Location: 21155-21476 bp Feature: domain Description: INTN1_C_like Location: 21515-21983 bp Feature: domain Description: INTN1_C_like Location: 21515-21983 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), COG3943 (Uncharacterized conserved protein ), RVT-GII, Intron_maturas2 (pfam01348), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: VVYY01000009.1 Bacteroides dorei strain BIOML-A1 scaffold9_size228258, whole genome shotgun sequence (228258 bp)
Overview 1 RT 1: 208801-215760 bp Neighborhood of RT #1 [208801, 217898] Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C KAP_NTPase Feature: gene Location: 208801-210048 bp Feature: domain Description: Relaxase Location: 208993-209353 bp Feature: domain Description: Relaxase Location: 208993-209353 bp Feature: gene Location: 210079-211005 bp Feature: domain Description: YWFCY Location: 210088-210265 bp Feature: domain Description: YWFCY Location: 210088-210265 bp Feature: gene Location: 211641-213293 bp Feature: RT Description: RVT_N Location: 211695-211938 bp Feature: RT Description: RVT_N Location: 211695-211938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 211983-212631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 211983-212631 bp Feature: domain Description: GIIM Note: maturase Location: 212685-212916 bp Feature: domain Description: GIIM Note: maturase Location: 212685-212916 bp Feature: gene Location: 213298-214512 bp Feature: domain Description: TraG-D_C Location: 213880-214210 bp Feature: domain Description: TraG-D_C Location: 213880-214 210 bp Feature: gene Location: 214644-217898 bp Feature: domain Description: KAP_NTPase Location: 214782-215760 bp Feature: domain Description: KAP_NTPase Location: 214 782-215760 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696), KAP_NTPase (pfam07693)